PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013631720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 328aa MW: 35494.2 Da PI: 10.4074 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.9 | 3.1e-31 | 253 | 312 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp+++++tYegeH+h+k XP_013631720.1 253 ADEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPTMLIVTYEGEHRHQK 312 69************************8766****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 6.1E-17 | 201 | 250 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-33 | 240 | 312 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.274 | 247 | 313 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-26 | 250 | 312 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-37 | 252 | 312 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-27 | 254 | 311 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MTVDIMRFPK MEDQTAIQEA ASQGLKSMEH LISVLSNRPK DHNADCSEIT DFAVSNFKKV 60 ISLLNRTGHA RFRRGPVQSS PSSSSSSAAA PPLPPVSQQT PPSQLSPPAP VITPGTFVQS 120 HQQSLTLDFT RPTVFGAKTK GTEIVEFAKE SFSVSSNSSF MSSAITGDGS VSKGSSIFLA 180 PAPTAPVASS GKPPLAGLPY RKRCFEHDHS QNFSGKISGS GSGKCHCKKS RKNRMKRSVR 240 VPAISAKIAD IPADEYSWRK YGQKPIKGSP HPRGYYKCST FRGCPARKHV ERALDDPTML 300 IVTYEGEHRH QKSAMNENIS SSLVFGSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 240 | 311 | 2 | 72 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00278 | DAP | Transfer from AT2G24570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013631720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912392 | 0.0 | EU912392.1 Brassica napus WRKY17-1 transcription factor (WRKY17-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631720.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 isoform X2 | ||||
Swissprot | Q9SJA8 | 0.0 | WRK17_ARATH; Probable WRKY transcription factor 17 | ||||
TrEMBL | A0A0D3C1T5 | 0.0 | A0A0D3C1T5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g154730.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24570.1 | 1e-158 | WRKY DNA-binding protein 17 |
Publications ? help Back to Top | |||
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