PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631719.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 330aa    MW: 35744.5 Da    PI: 10.3635
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.2e-31255314260
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                      D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+k
  XP_013631719.1 255 ADEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPTMLIVTYEGEHRHQK 314
                     69************************8766****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-15201252IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-33242314IPR003657WRKY domain
PROSITE profilePS5081130.274249315IPR003657WRKY domain
SuperFamilySSF1182902.22E-26252314IPR003657WRKY domain
SMARTSM007743.6E-37254314IPR003657WRKY domain
PfamPF031065.9E-27256313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTVDIMRFPK MEDQTAIQEA ASQGLKSMEH LISVLSNRPK DHNADCSEIT DFAVSNFKKV  60
ISLLNRTGHA RFRRGPVQSS PSSSSSSAAA PPLPPVSQQT PPSQLSPPAP VITPGTFVQS  120
HQQSLTLDFT RPTVFGAKTK GTEIVEFAKE SFSVSSNSSF MSSAITGDGS VSKGSSIFLA  180
PAPTAPVASS GKPPLAGLPY RKRCFEHDHS QNFSGKISGS GSGKCHCKKS YSRKNRMKRS  240
VRVPAISAKI ADIPADEYSW RKYGQKPIKG SPHPRGYYKC STFRGCPARK HVERALDDPT  300
MLIVTYEGEH RHQKSAMNEN ISSSLVFGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20242313272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00278DAPTransfer from AT2G24570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123920.0EU912392.1 Brassica napus WRKY17-1 transcription factor (WRKY17-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631719.10.0PREDICTED: probable WRKY transcription factor 17 isoform X1
SwissprotQ9SJA81e-179WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLA0A0D3C1T50.0A0A0D3C1T5_BRAOL; Uncharacterized protein
STRINGBo4g154730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25082772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-157WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]