 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_013631650.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
E2F/DP |
| Protein Properties |
Length: 467aa MW: 51045.9 Da PI: 4.8953 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013631650.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 82.3 | 4.1e-26 | 160 | 225 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kf++l++++++g+++ln++a++L +v ++RRiYDi+NVLe+++liek kn+i wkg
XP_013631650.1 160 RYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIDLIEKPLKNRILWKG 225
6899******************************...99..****************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MSGGVRSSPG SSRQPPPPPQ HPAASVPVVP PIRRHLAFAS TKPPFHPSDN YHRFTPSHHA 60
NNLVNGCGGL VDREEDAVVL RSPSRKRKST MDVVTTTTTS TSNGFTSSDG FTRSPCRTPV 120
SAKGGRVNIK SKAKGNQSIP QTPISNIGSP ATLTPSGSCR YDSSLGLLTK KFVNLIKQAK 180
DGMLDLNKAA ETLEVQKRRI YDITNVLEGI DLIEKPLKNR ILWKGVDALR PGDVDADVSD 240
VQAEIENLSL EEQALDNQIR ETEQRLRDLS ENEKNQKWLF VTEEDIKSLP GFQNQTLIAV 300
KAPHGTTLEV PDPDEAVGHP QRRYRIILRS TMGPIDVYLV SEFEEKFEDT NGPAAPPPPC 360
LPIASCSGST ENRNIEALTV DNTGTAVEDQ LSQTHANAQP GETSDLNYLE EQNDDTDYWL 420
LSNADISMTD IWKTDCGIDW DYGIADVSTP PPIIGDISPT AIDSIPR
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JN942984 | 0.0 | JN942984.1 Brassica juncea E2F transcription factor (E2Fa) mRNA, partial cds. |
