PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631648.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 308aa    MW: 34811 Da    PI: 5.8625
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573131.92.3e-41109204397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 
                     fqr+w+eeDei++LqG+id+k++tg+sp+dd +afy+ vkks+sf+v+k+q++eKir LKkKf+++  + +k+gk+psfsk+hd+k+f+l+k +W
  XP_013631648.1 109 FQRVWTEEDEIAVLQGIIDYKNETGSSPYDDKNAFYDLVKKSVSFDVTKTQFMEKIRALKKKFENNLGRcKKKGKDPSFSKAHDRKAFDLAKLVW 203
                     9********************************************************************8899********************** PP

          DUF573  97 g 97 
                     g
  XP_013631648.1 204 G 204
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-35109204IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSGKLLKKLE DPPIASSSSE EEDDEDAVAN SSSEEEEETD SETEAEPVAK PLAKPPADSR  60
KVETSSKPET KKKRSSEADE GEEAKRVKRV SGEDDHKKSK GEETKKSCFQ RVWTEEDEIA  120
VLQGIIDYKN ETGSSPYDDK NAFYDLVKKS VSFDVTKTQF MEKIRALKKK FENNLGRCKK  180
KGKDPSFSKA HDRKAFDLAK LVWGDNGIMA LEPLSAVKSK KVEHAVKKQE EPAVKKQEFV  240
PIVDLVARFG VDDLAAKQGW SRLSSEDKER FEEQWKALQL KEFKFYSQKS GFIHEVVTKM  300
AEASRPDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631648.10.0PREDICTED: mediator-associated protein 1-like
SwissprotC0SUU69e-74STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLA0A0D3C0N80.0A0A0D3C0N8_BRAOL; Uncharacterized protein
STRINGBo4g143830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-67DNA-binding storekeeper protein-related transcriptional regulator