PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631626.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 368aa    MW: 40638.3 Da    PI: 5.6373
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573119.71.5e-37147235297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     +fqrlw+eeDei++LqG+i fk++tg sp+dd++a y+++kksisf+vsk+q+++K+r+LKkK+ +k+k        sf+k+hdqk++ l++ iW
  XP_013631626.1 147 AFQRLWTEEDEIAVLQGMIVFKNDTGNSPYDDTNAYYDYIKKSISFEVSKNQFMDKLRSLKKKYMGKEKP-------SFTKPHDQKSYRLCMYIW 234
                     69**************************************************************998776.......****************** PP

          DUF573  97 g 97 
                     g
  XP_013631626.1 235 G 235
                     9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.2E-30148235IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MTKKRDPLEN PPAASSSGDD DEVDSSAGEE EEREDDDDAS SSEEELPVKS HSSSAAVTIA  60
VPGKTAAQQA SDLDSGSETE TDSDSDTEQP PNQRSGKAIL AAAKSKKEKS PPPATKSGTK  120
RPSEGTSNET NSKRAKKTGE DSKKPPAFQR LWTEEDEIAV LQGMIVFKND TGNSPYDDTN  180
AYYDYIKKSI SFEVSKNQFM DKLRSLKKKY MGKEKPSFTK PHDQKSYRLC MYIWGPDGMG  240
LETAVKSNGV SKKKTMKLDS VKQDLSFASS PNGKAVVDDD KRVLVLGGDV DRKCDWFENS  300
FLVRGIAGFG VDEHYVKQRW SLVPVETKKT VEEKVKMLQA KEIEFVLQKT KILHEVTSMI  360
AEASKNKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631626.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631626.10.0PREDICTED: mediator-associated protein 1-like
SwissprotQ9SYA91e-127STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A0D3BVI20.0A0A0D3BVI2_BRAOL; Uncharacterized protein
STRINGBo4g087160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-97DNA-binding storekeeper protein-related transcriptional regulator