PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013631611.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 359aa MW: 39325.3 Da PI: 9.1331

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013631611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.7e-39	70	131	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss XP_013631611.1 70 PQEKINCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 131 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-25	69	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.5E-33	72	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MDATKWTQGF QEMMNVKPME QIMIPNNNTH QSNTPSIARP NTVLTSSGGV SAGVSNSNNT 60 SVVVERKSRP QEKINCPRCN STNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG 120 GSSRKNKRSS SSNILQTTPS SLGLTTTLPD LNPPIIFSNQ IPNKSKGASQ DLNMLSFPVM 180 QDQHVHMSKF LQMHKMEGNG NMTHQQPSSS SSLYGSSSSP VSALELLRTG VNVSSRSGIN 240 SFMPSGPMMD SSNNVMYTSS GFPTMVDYKT SNLSFSTDHQ GLGHNNNNNS SGDAHSDHHQ 300 GRVLFPFGDQ MKELSSSITQ EVDHDDNQQQ KSHGNNNNSS PNNGYWSGMF STTGGGSSW

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MDATKWTQGF QEMMNVKPME QIMIPNNNTH QSNTPSIARP NTVLTSSGGV SAGVSNSNNT  60
SVVVERKSRP QEKINCPRCN STNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG  120
GSSRKNKRSS SSNILQTTPS SLGLTTTLPD LNPPIIFSNQ IPNKSKGASQ DLNMLSFPVM  180
QDQHVHMSKF LQMHKMEGNG NMTHQQPSSS SSLYGSSSSP VSALELLRTG VNVSSRSGIN  240
SFMPSGPMMD SSNNVMYTSS GFPTMVDYKT SNLSFSTDHQ GLGHNNNNNS SGDAHSDHHQ  300
GRVLFPFGDQ MKELSSSITQ EVDHDDNQQQ KSHGNNNNSS PNNGYWSGMF STTGGGSSW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013631611.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631611.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A3P6CLP3	0.0	A0A3P6CLP3_BRAOL; Uncharacterized protein
STRING	Bo4g197200.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	1e-144	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]