PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013631589.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 277aa MW: 29794.4 Da PI: 9.6539

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013631589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.4	9.9e-16	207	249	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++++r++kNRe+A rsR+RK+a+++eLe kv Le+eN++L+ XP_013631589.1 207 RKQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERLRR 249 689**************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.2E-15	201	250	No hit	No description
SMART	SM00338	2.2E-12	203	275	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.473	205	250	IPR004827	Basic-leucine zipper domain
CDD	cd14707	5.28E-23	207	261	No hit	No description
SuperFamily	SSF57959	1.38E-10	207	252	No hit	No description
Pfam	PF00170	2.4E-12	207	250	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	210	225	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDSQREPKSH SLNRQGGSSL YSLTLDEVQT HLGGSGKALG SMNLDELLKS VCSVDVNGAA 60 AAAADTTQEG GGLSRQGSLT LPRDLSKKTV EQVWKDIQQN ANGSSGGANE RRGNNKEPTL 120 GEMTLEDLLL KAGVVTETVT GGGGGGGGGL GQNIPQAGPW VQYHQLPSMP QGQSFMPYPV 180 ADMQAMVSQT SLMGGLSDTQ TPGTVERKQK RMIKNRESAA RSRARKQAYT QELEIKVSRL 240 EEENERLRRQ KEVEKILPSA PPPDPKRQLR RTSSAPF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013631589.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017162	4e-82	AB017162.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 3 (AREB3), complete cds.
GenBank	AF334208	4e-82	AF334208.1 Arabidopsis thaliana bZIP protein DPBF3 mRNA, complete cds.
GenBank	AY062448	4e-82	AY062448.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850; T8M16_180) mRNA, complete cds.
GenBank	AY081670	4e-82	AY081670.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631589.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	1e-146	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0D3BXF4	1e-176	A0A0D3BXF4_BRAOL; Uncharacterized protein
STRING	Bo4g112690.1	1e-177	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-128	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]