PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631386.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 374aa    MW: 40348.6 Da    PI: 9.9595
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.89.7e-23256316161
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                     e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l++++ +l+ 
  XP_013631386.1 256 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSNNLRG 316
                     89*****************************************************999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.9E-31196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165967.7E-15126215No hitNo description
Gene3DG3DSA:1.20.5.1706.9E-19250316No hitNo description
PfamPF001705.5E-21256318IPR004827Basic-leucine zipper domain
SMARTSM003383.0E-21256320IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346258321IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-11259315No hitNo description
CDDcd147024.33E-22261312No hitNo description
PROSITE patternPS000360263278IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGKSEEPKVT KSDNKPSSPP ADQTNVHVYP DWAAMQAYYG PRVAIPPYYN SAMAAASGHP  60
PPPYMWNPQH MMSPYGTPYA AVYPHGGGVY AHPGFPMPQS QKGAALSTPG TPLNIDTPSK  120
STGNTENGLM KKLKEFDGLA MSLGNGNNGD EGKRSRNSSE TDGSSDGSDG NTTGADEPKL  180
KRSREGTPTK DEKKHLVQSS SFRSVSQSSG DNVVKHSVQG GGGAIVSAAG VSANSNPTFM  240
SQSLAMVPPE TWLQNERELK RERRKQSNRE SARRSRLRKQ AETEELARKV EALTAENMAL  300
RSELNQLNEK SNNLRGANAT LLDKLKSSEP EKRVKSSGNG DDKNKKQGDN ETNSTSKLHQ  360
LLDTKPRADG VAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278RRSRLRK
2272279RRSRLRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU271080.0U27108.1 Brassica napus transcription factor (BnGBF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302491.10.0G-box-binding factor 3-like
RefseqXP_013631386.10.0PREDICTED: G-box-binding factor 3 isoform X1
RefseqXP_013631387.10.0PREDICTED: G-box-binding factor 3 isoform X1
RefseqXP_013631388.10.0PREDICTED: G-box-binding factor 3 isoform X1
RefseqXP_013686159.10.0G-box-binding factor 3-like isoform X2
RefseqXP_022556027.10.0G-box-binding factor 3-like isoform X1
RefseqXP_022556028.10.0G-box-binding factor 3-like isoform X2
RefseqXP_022556029.10.0G-box-binding factor 3-like isoform X2
RefseqXP_022556030.10.0G-box-binding factor 3-like isoform X2
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A0D3BNV30.0A0A0D3BNV3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BD910.0A0A3P6BD91_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g010410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.10.0G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]