PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631259.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 457aa    MW: 48983.4 Da    PI: 8.7665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.49e-125477427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C +++rtG C yG+rC+F+H+p
  XP_013631259.1 54 PDCAYYMRTGVCGYGSRCRFNHPP 77
                    78********************97 PP
2zf-CCCH38.71.7e-12100122527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+f+++tGtCk+G++CkF+H++
  XP_013631259.1 100 PCQFYLKTGTCKFGASCKFNHPR 122
                     7********************96 PP
3zf-CCCH33.57.3e-11144168226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C++f++tG+Ck+G +CkF+H+
  XP_013631259.1 144 GENECSYFLKTGQCKFGITCKFHHP 168
                     5679********************8 PP
4zf-CCCH37.83.2e-12289313327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tG Ck+G +CkF+H++
  XP_013631259.1 289 EPECQYYLKTGDCKFGTSCKFHHPR 313
                     689********************96 PP
5zf-CCCH32.71.3e-10334358226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +  +C f+ ++G+Ck+G++CkF H+
  XP_013631259.1 334 GVQRCTFYVQNGFCKFGSTCKFDHP 358
                     6779********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.6E-55077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7795078IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-95477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-65578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-55676IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-695122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-698123IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10100122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943100123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864142170IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5142169IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8144168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5145170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103286314IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5286313IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9289313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6291316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5292314IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183332360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6334363IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8334358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5338358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDMYGRTPPT AMNGSHAPPQ WTPGDADTGL LLQESSMWRL GLGSEAYPQR AGAPDCAYYM  60
RTGVCGYGSR CRFNHPPDRA SVEATVRATG QYPERLGALP CQFYLKTGTC KFGASCKFNH  120
PRNAAGGSMT HVPLNIYGYP VRQGENECSY FLKTGQCKFG ITCKFHHPHP ASAASATATL  180
PPPASAPQFY SSVQQHSLMP GPPSSSLRPL LPGSYMQGAY GPMLLTTPGV LPIQAWNPYS  240
APVSPALSPG AQHAASLYGV TQLSSTTPGV YPSGVVTLKE ESFPERPAEP ECQYYLKTGD  300
CKFGTSCKFH HPRDRVPPRP NCDLSSVGLP LRPGVQRCTF YVQNGFCKFG STCKFDHPVG  360
TIRYNPSASS LADAPVAPYP VTSLLASSSS SSAELIPGDP YLSGSRSTSN NISAGLIFSQ  420
IGVSLPPFTD LQLSSQTSLS LSGSRITRQG REIRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896341e-159AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631259.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D3BNI30.0A0A0D3BNI3_BRAOL; Uncharacterized protein
STRINGBo4g002280.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein