PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631258.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 458aa    MW: 49054.4 Da    PI: 8.7665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.49e-125578427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C +++rtG C yG+rC+F+H+p
  XP_013631258.1 55 PDCAYYMRTGVCGYGSRCRFNHPP 78
                    78********************97 PP
2zf-CCCH38.71.7e-12101123527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+f+++tGtCk+G++CkF+H++
  XP_013631258.1 101 PCQFYLKTGTCKFGASCKFNHPR 123
                     7********************96 PP
3zf-CCCH33.57.3e-11145169226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C++f++tG+Ck+G +CkF+H+
  XP_013631258.1 145 GENECSYFLKTGQCKFGITCKFHHP 169
                     5679********************8 PP
4zf-CCCH37.83.2e-12290314327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tG Ck+G +CkF+H++
  XP_013631258.1 290 EPECQYYLKTGDCKFGTSCKFHHPR 314
                     689********************96 PP
5zf-CCCH32.71.3e-10335359226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +  +C f+ ++G+Ck+G++CkF H+
  XP_013631258.1 335 GVQRCTFYVQNGFCKFGSTCKFDHP 359
                     6779********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7795179IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-55178IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-95578IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-65679IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-55777IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-696123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-699124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943101124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5101123IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10101123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864143171IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5143170IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8145169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5146171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103287315IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5287314IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9290314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6292317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5293315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183333361IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5333360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6335364IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5339359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDMYGRTPPT AMNGSHAPPQ WTPGDADTGL LLQAESSMWR LGLGSEAYPQ RAGAPDCAYY  60
MRTGVCGYGS RCRFNHPPDR ASVEATVRAT GQYPERLGAL PCQFYLKTGT CKFGASCKFN  120
HPRNAAGGSM THVPLNIYGY PVRQGENECS YFLKTGQCKF GITCKFHHPH PASAASATAT  180
LPPPASAPQF YSSVQQHSLM PGPPSSSLRP LLPGSYMQGA YGPMLLTTPG VLPIQAWNPY  240
SAPVSPALSP GAQHAASLYG VTQLSSTTPG VYPSGVVTLK EESFPERPAE PECQYYLKTG  300
DCKFGTSCKF HHPRDRVPPR PNCDLSSVGL PLRPGVQRCT FYVQNGFCKF GSTCKFDHPV  360
GTIRYNPSAS SLADAPVAPY PVTSLLASSS SSSAELIPGD PYLSGSRSTS NNISAGLIFS  420
QIGVSLPPFT DLQLSSQTSL SLSGSRITRQ GREIRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631258.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896341e-159AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631258.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A078IST90.0A0A078IST9_BRANA; BnaC04g00080D protein
STRINGBo4g002280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein