PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013631147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 575aa MW: 63207.8 Da PI: 6.593 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.6 | 2.4e-27 | 191 | 244 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt eLH++Fv av+qL G ekA Pk+il+lm+v+ Lt+e+v+SHLQk+Rl XP_013631147.1 191 KPRVVWTVELHKKFVAAVNQL-GFEKAMPKKILDLMNVEKLTRENVASHLQKFRL 244 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 84.5 | 3.3e-28 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+++ +++l+++l + +y +v+++ ++++alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ + + G XP_013631147.1 20 VLAVDDDQTCLRILESLLHRCQY-HVTTTNQAQKALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVTHG 112 799********************.***************888888*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_013631147.1 113 ACDYLLKPVRIEELKN 128 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 7.9E-170 | 1 | 575 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.24E-35 | 17 | 138 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.9E-43 | 17 | 165 | No hit | No description |
SMART | SM00448 | 4.6E-33 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.285 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.0E-25 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.18E-28 | 21 | 133 | No hit | No description |
PROSITE profile | PS51294 | 11.056 | 188 | 247 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 188 | 249 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-19 | 189 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 191 | 244 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.3E-7 | 193 | 242 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MTVERQDCVA LDQFPVGMRV LAVDDDQTCL RILESLLHRC QYHVTTTNQA QKALELLREN 60 KNKFDLVISD VDMPDMDGFK LLELVGLEMD LPVIMLSAHS DPKYVMKGVT HGACDYLLKP 120 VRIEELKNIW QHVVRKNRGS NNGDKKDGSG NEGVANSDQN NGRANRKRKD QYNEDEDEER 180 DDNDDPSSQK KPRVVWTVEL HKKFVAAVNQ LGFEKAMPKK ILDLMNVEKL TRENVASHLQ 240 KFRLYLKRIS GNQQAIMANS DLHFLQMSNG LDGFHHRPIP VGSGQFHGGA AAAGMRPFPP 300 NNGILGRLNT PSGIGGVRNL SSPPSSGMFL QNPTDLGKFH HVSSLPLNHI DGGNILQGLP 360 IPLEFDQLQT NNNKSIIAGN SMAFPSFPTS LPNNNNHLVL EGHPQASPSA FPGHQINKRL 420 EHWSNAVSSS SSTLPPPGQN SNSLISHQFD ASSSNYSIPF CDSTIPLNPA LDHTNPRAFY 480 RATDLDSNAN VQPGVYYDSL QMRQSGNYGP TTDAMLSSNP KEGFTVGQQK LQSGFMGGEA 540 GSLDDIVNST MKQSQGDLSE GDLGYGGFSS LRTCI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-27 | 187 | 250 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected immediately after seed germination. {ECO:0000269|PubMed:17363254}. | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in leaves. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013631147.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631147.1 | 0.0 | PREDICTED: two-component response regulator ARR12 isoform X2 | ||||
Refseq | XP_013743915.1 | 0.0 | two-component response regulator ARR12 isoform X2 | ||||
Swissprot | P62598 | 0.0 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
TrEMBL | A0A078JR86 | 0.0 | A0A078JR86_BRANA; Two-component response regulator | ||||
TrEMBL | A0A0D3C207 | 0.0 | A0A0D3C207_BRAOL; Two-component response regulator | ||||
TrEMBL | A0A3P6CXV1 | 0.0 | A0A3P6CXV1_BRAOL; Two-component response regulator | ||||
STRING | Bo4g157430.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 0.0 | response regulator 12 |