PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013630999.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 827aa MW: 91250.4 Da PI: 6.165

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013630999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.5e-29	529	579	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+++l++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ XP_013630999.1 529 EKNVTLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 579 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	518	599	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-28	531	579	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.18E-22	721	812	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.7E-23	725	806	No hit	No description
PROSITE profile	PS51745	21.336	727	809	IPR000270	PB1 domain
SMART	SM00666	6.6E-23	727	809	IPR000270	PB1 domain
CDD	cd06407	4.25E-36	728	808	No hit	No description
Pfam	PF00564	4.2E-17	728	808	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MEHPFASREK GFGYQDIPTE QQMDGLSFGP HDMLNSSSSS ELMNFDSFST WFNTPSPTDL 60 LFSQYGLSTS SHPPETRAGL TRSFHDLESS YHTEERSTSS QIHCSLDINE LSGKRRRVSN 120 QTIPRSLSHS LDEKMLKALS LFIESSSGSG EGILAQIWTP IKAGDQYILS TCDQAYLLDP 180 RLSQYREASR KFTFASKPNQ CSSSPGLPGR VFISGVREWT SNVRYYKRDE YLRMKHAVDN 240 EVRGSIAIPI LEEASGTSCC AVMELVTSKE KHDFDVEMES VCRALQAVNL RTSSIPRPQY 300 LSSNQREALA EIKDVLRAVC HAHKLPLALA WLPCNNGPNS LVLCVEETAC YVNDMEMEGF 360 VHACVEHCLR EKEGIVGKAF VSNHPFFASD VKACDIGEYP LVHHARKYGL NAAVAIKLRS 420 THTGEDDYIL ELFLPVSMRG SLEQQLLLDS LSGTMQRICR TLRTVSDVGV TKRSGEISTC 480 SRSFQTIVLD CELNSNSSDK DNSSTGSQGT FEQDKSKART PEKKKSTTEK NVTLSVLQQH 540 FSGSLKDAAK SLGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQTVL DSVQGVEGGL 600 RFDSATGEFV AAGPTPKDPS SNDDNACEDT SFELLKAKSV GNAVKLEDDI ITNDSFMDAS 660 GQQCDWMAEQ SGFNGKLSSP VTDGMETTIR SMSDSSNSSG AVMMGSSSTS MDNGNQTRTH 720 GESGSTTLTV KATYREDTIR FKFESSVGCS QLYKEVGKRL KLQEGSFQLK YLDDEEEWVL 780 MVTDSDLQEC LEILYGMGKH TVKFLVRDLP APIGSSGGSN GYLGTGL

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MEHPFASREK GFGYQDIPTE QQMDGLSFGP HDMLNSSSSS ELMNFDSFST WFNTPSPTDL  60
LFSQYGLSTS SHPPETRAGL TRSFHDLESS YHTEERSTSS QIHCSLDINE LSGKRRRVSN  120
QTIPRSLSHS LDEKMLKALS LFIESSSGSG EGILAQIWTP IKAGDQYILS TCDQAYLLDP  180
RLSQYREASR KFTFASKPNQ CSSSPGLPGR VFISGVREWT SNVRYYKRDE YLRMKHAVDN  240
EVRGSIAIPI LEEASGTSCC AVMELVTSKE KHDFDVEMES VCRALQAVNL RTSSIPRPQY  300
LSSNQREALA EIKDVLRAVC HAHKLPLALA WLPCNNGPNS LVLCVEETAC YVNDMEMEGF  360
VHACVEHCLR EKEGIVGKAF VSNHPFFASD VKACDIGEYP LVHHARKYGL NAAVAIKLRS  420
THTGEDDYIL ELFLPVSMRG SLEQQLLLDS LSGTMQRICR TLRTVSDVGV TKRSGEISTC  480
SRSFQTIVLD CELNSNSSDK DNSSTGSQGT FEQDKSKART PEKKKSTTEK NVTLSVLQQH  540
FSGSLKDAAK SLGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQTVL DSVQGVEGGL  600
RFDSATGEFV AAGPTPKDPS SNDDNACEDT SFELLKAKSV GNAVKLEDDI ITNDSFMDAS  660
GQQCDWMAEQ SGFNGKLSSP VTDGMETTIR SMSDSSNSSG AVMMGSSSTS MDNGNQTRTH  720
GESGSTTLTV KATYREDTIR FKFESSVGCS QLYKEVGKRL KLQEGSFQLK YLDDEEEWVL  780
MVTDSDLQEC LEILYGMGKH TVKFLVRDLP APIGSSGGSN GYLGTGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	117	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013630999.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	4e-97	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	CP002685	4e-97	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630999.1	0.0	PREDICTED: protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0D3BPK3	0.0	A0A0D3BPK3_BRAOL; Uncharacterized protein
STRING	Bo4g019840.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]