PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630910.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 297aa    MW: 33089.4 Da    PI: 10.5922
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.57e-10264283322
                     -SS-EEEEEEE--TT-SS-E CS
            WRKY   3 DgynWrKYGqKevkgsefpr 22 
                     D y+WrKYGqK++kgs++p 
  XP_013630910.1 264 DDYSWRKYGQKPIKGSPYPS 283
                     99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.1E-16219260IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-9250284IPR003657WRKY domain
PROSITE profilePS5081112.691257297IPR003657WRKY domain
SuperFamilySSF1182903.14E-7260283IPR003657WRKY domain
SMARTSM007740.004262297IPR003657WRKY domain
PfamPF031062.3E-6264288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGFDMEEIEG TNRAAVESCH RVLNLLHQQD HGSSLVSETR EAVSRFNRVG SLLSKSVGHA  60
RFRRANKKPL THLSQAIFLD PCLLQTTQLP ESSQKLRSGF HELSLRPNDS LTLGTRSFSL  120
KAPPLFQLNQ QQQQQQLHER LQAHHLHQQQ QQRHHQAEIM LRKCSGGISL SFDNSSCTPT  180
MSSTRSFVSS LSIDGSVANA EGRNSSHLVG DQSLLPHSKR KCLLKGDEHG SSSRCHCSKK  240
RKHRVRRSIR VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPSGVLKIAG DITSAVA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630910.10.0PREDICTED: probable WRKY transcription factor 21 isoform X2
SwissprotO043361e-128WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0D3C3550.0A0A0D3C355_BRAOL; Uncharacterized protein
STRINGBo4g173290.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-53WRKY DNA-binding protein 21