PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630909.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 330aa    MW: 37122 Da    PI: 10.2799
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30264322360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eH h+k
  XP_013630909.1 264 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCVEDPAMLIVTYEAEHSHPK 322
                     99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.0E-16219260IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.4E-33250322IPR003657WRKY domain
PROSITE profilePS5081129.93257323IPR003657WRKY domain
SuperFamilySSF1182902.88E-26260322IPR003657WRKY domain
SMARTSM007742.6E-36262322IPR003657WRKY domain
PfamPF031065.4E-26264321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGFDMEEIEG TNRAAVESCH RVLNLLHQQD HGSSLVSETR EAVSRFNRVG SLLSKSVGHA  60
RFRRANKKPL THLSQAIFLD PCLLQTTQLP ESSQKLRSGF HELSLRPNDS LTLGTRSFSL  120
KAPPLFQLNQ QQQQQQLHER LQAHHLHQQQ QQRHHQAEIM LRKCSGGISL SFDNSSCTPT  180
MSSTRSFVSS LSIDGSVANA EGRNSSHLVG DQSLLPHSKR KCLLKGDEHG SSSRCHCSKK  240
RKHRVRRSIR VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV  300
ERCVEDPAML IVTYEAEHSH PKLPSQAVTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20250324275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630909.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630909.10.0PREDICTED: probable WRKY transcription factor 21 isoform X1
SwissprotO043361e-165WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0D3C3550.0A0A0D3C355_BRAOL; Uncharacterized protein
STRINGBo4g173290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-89WRKY DNA-binding protein 21