PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 306aa    MW: 34001.9 Da    PI: 9.2472
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19224258135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C ttkTp+WR+gp g+ktLCnaCG+++r+ +l
  XP_013630850.1 224 CTHCETTKTPQWREGPGGPKTLCNACGVRFRSGRL 258
                     *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-19218272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.82222254IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15222281No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14222255IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.42E-16223272No hitNo description
PROSITE patternPS003440224249IPR000679Zinc finger, GATA-type
PfamPF003204.0E-17224258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNNGSWLPEE DFKGLTDNFF DDLINHIDFP LEDIETTNEE GDWGADFKNL IPPPSDVLTS  60
LSSEFTRGGT NGNGQRVGAQ KKPVPTLKQE SGISSTVDTS LPDVKVSKLF QSSSPVSVLE  120
NAAANGSAAS FQNQNRAQRR AFPVKGIRSK RKRPTIPTFM SLHSFLSEML EKKLAMLDDD  180
SGSEDTYNLS SESSAKKRRK KTNNNSNNSH CPEPFNADGT VRKCTHCETT KTPQWREGPG  240
GPKTLCNACG VRFRSGRLLP EYRPASSPTF IPTVHSNSHR KIIEMRRKEE EGQFVTGMPR  300
GFRYRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199KKRRK
2195200KKRRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630850.10.0PREDICTED: putative GATA transcription factor 13
RefseqXP_013692534.10.0putative GATA transcription factor 13
SwissprotQ6DBP81e-100GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0D3BU680.0A0A0D3BU68_BRAOL; Uncharacterized protein
STRINGBo4g071630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.11e-86GATA transcription factor 13