PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013630723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 340aa MW: 38001 Da PI: 10.2824 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.8e-31 | 274 | 332 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYe eHnh+k XP_013630723.1 274 DDYSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 332 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.1E-17 | 223 | 270 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-33 | 260 | 332 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.366 | 267 | 333 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-26 | 270 | 332 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 272 | 332 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-26 | 274 | 331 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEEIEGTNRA AVESCHRVLN LISSRPHQQD HLYDMSLLSE AREAVFRFKR VGNLLSNSSS 60 SSSVGHARFR RAKRPLIHLS QTIFLDSCLQ RTEPPSSQKA PVVLRSDLSL GPADSLTLGT 120 RSFGLNSNAK APLLQLNPQQ QQQLHERLQA HQQQQQRHQA EMMLRKCNSG MSLSFDNSSC 180 TPTMSSTRSF ISSLSIDGSV NNSSSFHLLG APSSTDQSSQ YSKRKCLMRG ADEHGSAKCG 240 SSSRCHCSKK RKHRIRRSIR VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS 300 IRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQTVTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 260 | 335 | 2 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.14019 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013630723.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430039 | 0.0 | KF430039.1 Brassica rapa WRKY transcription factor 21 (WRKY21) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013630723.1 | 0.0 | PREDICTED: probable WRKY transcription factor 21 | ||||
Refseq | XP_013683247.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-166 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A078GH67 | 0.0 | A0A078GH67_BRANA; BnaC03g17030D protein | ||||
TrEMBL | A0A0D3B496 | 0.0 | A0A0D3B496_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g024750.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3567 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 3e-83 | WRKY DNA-binding protein 21 |