PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013630688.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 327aa MW: 38118.7 Da PI: 4.5585

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013630688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.9	2.2e-12	84	165	5	86
trihelix 5 qevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 qe + +e+ ++ +l+r++l+ +W ev++k+ +e ers +qC+ +nl+++ykk++ k + ss++++f++++ XP_013630688.1 84 QEAFVVLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRSERSETQCRRMVDNLKRKYKKERIKVDK-SGLGSSKWSFFNKMD 165 667777888888888999**************777889****************9987777.589999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-17	83	167	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEED DDEEEQEDEG GGGGGYSHRE 60 RFQKRLKPTK HDFSSGPSET KAEQEAFVVL EVWGDRFLQL GRRSLRNEDW NEVAEKVSEE 120 LRSERSETQC RRMVDNLKRK YKKERIKVDK SGLGSSKWSF FNKMDMLLGG GSSAKPEFGL 180 ACGVDSGEFV FMNTKVYLEK SNGFDEMMDS PGASEEDDDD EEEEVEYERR RKKGDDAASY 240 KLLAESVERF GKVYEKMERS KKEQMKELEK MRGEFQRDLE LQKKQIVERA QSEIARLREE 300 EEENHHDDGG ESEDEGMEND SDVNLSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013630688.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630688.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A0D3BD27	0.0	A0A0D3BD27_BRAOL; Uncharacterized protein
STRING	Bo3g083280.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-147	Trihelix family protein