PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630654.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 658aa    MW: 74191.5 Da    PI: 4.0579
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.4e-102883311053
                     HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +e L ++F++n  ps++ r  L+k+l+L+  +V+ WF+N R+
  XP_013630654.1 288 AAVEKLRQVFAENELPSKSVRDSLSKELSLDPGKVSKWFKNTRY 331
                     67899*************************************97 PP
2PHD414.5e-141873151
                    SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD  1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51
                    +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  XP_013630654.1 18 FCAECNSreASVDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKICDCK 73
                    6999**965555********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.4E-131075IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.8E-121473IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.031673IPR019787Zinc finger, PHD-finger
CDDcd155041.18E-301870No hitNo description
SMARTSM002496.7E-101871IPR001965Zinc finger, PHD-type
PfamPF006283.3E-111873IPR019787Zinc finger, PHD-finger
PROSITE patternPS0135901970IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.6E-11264330IPR009057Homeodomain-like
SuperFamilySSF466896.84E-10276341IPR009057Homeodomain-like
PROSITE profilePS5007112.341276336IPR001356Homeobox domain
SMARTSM003893.0E-10278340IPR001356Homeobox domain
CDDcd000863.46E-8279331No hitNo description
PfamPF000461.6E-7288331IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MEEKVMAPDG SIHHDHIFCA ECNSREASVD NDIILCDGTC NRAFHQKCLD PPLETESIPP  60
GDQGWFCKIC DCKIEIIDTM NAQIGTQYPV DSNWQDIFNE EANLPVGSEA TLNKEADWPS  120
DDSEDGDYDP EMKERSNSRS DSGGGGGDND GGSSSTSVSL ASDGVALSTG SWEGHEFGNA  180
VESGEARHEE TVHGPRQRKT VDYTKLYHEM FGKDAVLQEQ GSEDEDWGPS DRRKRRKESD  240
AASTVVTMCE NSKKDEDVVE EVQEQSERDP VSVGGKGGRR PIFRIPRAAV EKLRQVFAEN  300
ELPSKSVRDS LSKELSLDPG KVSKWFKNTR YMALRNRKAE SVKQPEDSKV LLSGDSGPEA  360
VMEKNTEADE SHDNMEEIVM EKTTETNEIQ ETDDETVMET NTDTNQIQET MEETVMEKNT  420
ESNVIQETMD EAVMEKNTEA NETQDTMDEA VMEERTEANE IQRETMEETI MEKTTEAHEV  480
QDSMDDETNT ETNEIQETVD EAVLETNTET NEVQDTMDKS VPLLFNDPTN QTTVSPCHDD  540
NNEEIQHAND YFPTPIEEEN QQYLEQKDSS LTLPPHEEVS SEMSLETSLE DNERKEVEEF  600
EAVMEMLCRA ENKLLDVTQR LERFRTPKGR KKLGKSSSCL HEEDSVVYVP TPEIKDGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630654.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630653.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0D3BM940.0A0A0D3BM94_BRAOL; Uncharacterized protein
STRINGBo3g175850.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]