PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630653.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 815aa    MW: 92604.9 Da    PI: 4.3717
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.7e-104454881053
                     HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +e L ++F++n  ps++ r  L+k+l+L+  +V+ WF+N R+
  XP_013630653.1 445 AAVEKLRQVFAENELPSKSVRDSLSKELSLDPGKVSKWFKNTRY 488
                     67899*************************************97 PP
2PHD40.65.9e-14175230151
                     SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  XP_013630653.1 175 FCAECNSreASVDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKICDCK 230
                     6999**965555********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.85E-13167232IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.0E-12171230IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.03173230IPR019787Zinc finger, PHD-finger
CDDcd155045.42E-31175227No hitNo description
PfamPF006284.3E-11175230IPR019787Zinc finger, PHD-finger
SMARTSM002496.7E-10175228IPR001965Zinc finger, PHD-type
PROSITE patternPS013590176227IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.1E-11421487IPR009057Homeodomain-like
SuperFamilySSF466898.98E-10433498IPR009057Homeodomain-like
PROSITE profilePS5007112.341433493IPR001356Homeobox domain
SMARTSM003893.0E-10435497IPR001356Homeobox domain
CDDcd000861.57E-7436488No hitNo description
PfamPF000462.1E-7445488IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MEGKSKKVTE KACVSVERVE STLLSSLVKK KGKETTSKRK YNKRKTEEEI CSRGLEEEED  60
EGKKRRRRKS KIQQKSNKVE EVDEALRLQR RTRYLLIKMK MQQNLIDAYA AEGWKGQSRE  120
KIRPDKELER ARKHILDCKL GLRDAIRQLD LLSSVGRMEE KVMAPDGSIH HDHIFCAECN  180
SREASVDNDI ILCDGTCNRA FHQKCLDPPL ETESIPPGDQ GWFCKICDCK IEIIDTMNAQ  240
IGTQYPVDSN WQDIFNEEAN LPVGSEATLN KEADWPSDDS EDGDYDPEMK ERSNSRSDSG  300
GGGGDNDGGS SSTSVSLASD GVALSTGSWE GHEFGNAVES GEARHEETVH GPRQRKTVDY  360
TKLYHEMFGK DAVLQEQGSE DEDWGPSDRR KRRKESDAAS TVVTMCENSK KDEDVVEEVQ  420
EQSERDPVSV GGKGGRRPIF RIPRAAVEKL RQVFAENELP SKSVRDSLSK ELSLDPGKVS  480
KWFKNTRYMA LRNRKAESVK QPEDSKVLLS GDSGPEAVME KNTEADESHD NMEEIVMEKT  540
TETNEIQETD DETVMETNTD TNQIQETMEE TVMEKNTESN VIQETMDEAV MEKNTEANET  600
QDTMDEAVME ERTEANEIQR ETMEETIMEK TTEAHEVQDS MDDETNTETN EIQETVDEAV  660
LETNTETNEV QDTMDKSVPL LFNDPTNQTT VSPCHDDNNE EIQHANDYFP TPIEEENQQY  720
LEQKDSSLTL PPHEEVSSEM SLETSLEDNE RKEVEEFEAV MEMLCRAENK LLDVTQRLER  780
FRTPKGRKKL GKSSSCLHEE DSVVYVPTPE IKDGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268KKRRRRK
26368KRRRRK
36570RRRKSK
4389394RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630653.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630653.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0D3BM940.0A0A0D3BM94_BRAOL; Uncharacterized protein
STRINGBo3g175850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]