PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630574.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 315aa    MW: 35791.1 Da    PI: 6.3885
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35201122103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d++++ li+w    nsf+v d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++
  XP_013630574.1  20 FVAKTYQMVNDPSTDWLITWGPAHNSFIVADPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQKHLLKN 105
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_013630574.1 106 IARRKHA 112
                     ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5516109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3317109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3717109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEDDKNNNTS STNTNVIAPF VAKTYQMVND PSTDWLITWG PAHNSFIVAD PLDFSQRILP  60
AYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEHFLRGQK HLLKNIARRK HARVMTDAED  120
GEIVKEIERL RDEQRELELE IQRMNQRIEA TEKRPEQMMA FLYKVADDPD FLPRMMLEKE  180
RTKQLVSDKK KRRVTVKSEE GAEEEERVFG VVSLSPSPSP ENSIGWVVPM QRQGTFGSYY  240
NETGMVTNSM ISTSSKSSSL TSTLSLPESV NRGGGGGCGS IQGETRDKEA ATFGGLVESN  300
PQTPPYPFSL FRGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251710926129Heat shock factor protein 1
5d5v_B1e-251710926129Heat shock factor protein 1
5d5v_D1e-251710926129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KKKRR
2188193KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630574.10.0PREDICTED: heat stress transcription factor C-1-like
RefseqXP_013630575.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV521e-144HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0D3BD510.0A0A0D3BD51_BRAOL; Uncharacterized protein
STRINGBo3g083520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-130heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]