PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013630538.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 511aa MW: 58124.1 Da PI: 6.3168

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013630538.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00017	371	392	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C +C++ F++++++++Hi XP_013630538.1 371 WVCCKCSEKFKDSESYMQHIVG 392 58*****************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.10	7.5E-8	45	163	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF04781	4.8E-28	52	160	IPR006866	Domain of unknown function DUF627, N-terminal
SuperFamily	SSF48452	5.9E-8	52	160	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF04780	6.5E-59	315	511	IPR006865	Domain of unknown function DUF629
PROSITE pattern	PS00028	0	373	394	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MGQKKKPPAP RSKQSLSSSA AEAEPSSEVS ACTSYDGDEP SNLAEIKVEC EKALTSFRRG 60 SYNKAIRLMK ESCSRHQHSA LIHRVQGTVC VKVSSVYEDA VTKQKYIRSA IESARKAVEL 120 SPNSIEFAHF YANLLYEAAS DGREYEEVLQ ECHRALSIEN PIDPAKDSLQ DESQHKILTP 180 EARIANVQDE LRSLIQKSNL GSLSTWMKHL RNGEGEFRLF DMRKMAEDPI ESNLVQTRRP 240 NEIKKATKTL EERRKEIEVR VAAGRLLQQK SESSSVDSVN SKGSDPALGS GQRSVERRKH 300 GNARKNDSTV ERRDRVRSYW ESTGKEMKKE LLRIKVSDLK SHFSASKDGD ANDIITEALS 360 FCEANKTWRF WVCCKCSEKF KDSESYMQHI VGEHIGNVLP KMQMVLPQSL DSERIEMLLT 420 SPWKPLDFPA AVKLRCSQQK IQNTEFNEFY AEDYMDDGDD CFQDAWNDTS PEKEKIGDAC 480 NGYEKNESEK GRLPNPFYLP DEWPISDDPE R

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MGQKKKPPAP RSKQSLSSSA AEAEPSSEVS ACTSYDGDEP SNLAEIKVEC EKALTSFRRG  60
SYNKAIRLMK ESCSRHQHSA LIHRVQGTVC VKVSSVYEDA VTKQKYIRSA IESARKAVEL  120
SPNSIEFAHF YANLLYEAAS DGREYEEVLQ ECHRALSIEN PIDPAKDSLQ DESQHKILTP  180
EARIANVQDE LRSLIQKSNL GSLSTWMKHL RNGEGEFRLF DMRKMAEDPI ESNLVQTRRP  240
NEIKKATKTL EERRKEIEVR VAAGRLLQQK SESSSVDSVN SKGSDPALGS GQRSVERRKH  300
GNARKNDSTV ERRDRVRSYW ESTGKEMKKE LLRIKVSDLK SHFSASKDGD ANDIITEALS  360
FCEANKTWRF WVCCKCSEKF KDSESYMQHI VGEHIGNVLP KMQMVLPQSL DSERIEMLLT  420
SPWKPLDFPA AVKLRCSQQK IQNTEFNEFY AEDYMDDGDD CFQDAWNDTS PEKEKIGDAC  480
NGYEKNESEK GRLPNPFYLP DEWPISDDPE R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013630538.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013615265.1	0.0	PREDICTED: uncharacterized protein LOC106321558
TrEMBL	A0A0D2ZVR9	0.0	A0A0D2ZVR9_BRAOL; Uncharacterized protein
STRING	Bo01977s010.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2940	3	6