PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013630538.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 511aa MW: 58124.1 Da PI: 6.3168 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00017 | 371 | 392 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C +C++ F++++++++Hi XP_013630538.1 371 WVCCKCSEKFKDSESYMQHIVG 392 58*****************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.10 | 7.5E-8 | 45 | 163 | IPR011990 | Tetratricopeptide-like helical domain |
Pfam | PF04781 | 4.8E-28 | 52 | 160 | IPR006866 | Domain of unknown function DUF627, N-terminal |
SuperFamily | SSF48452 | 5.9E-8 | 52 | 160 | IPR011990 | Tetratricopeptide-like helical domain |
Pfam | PF04780 | 6.5E-59 | 315 | 511 | IPR006865 | Domain of unknown function DUF629 |
PROSITE pattern | PS00028 | 0 | 373 | 394 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MGQKKKPPAP RSKQSLSSSA AEAEPSSEVS ACTSYDGDEP SNLAEIKVEC EKALTSFRRG 60 SYNKAIRLMK ESCSRHQHSA LIHRVQGTVC VKVSSVYEDA VTKQKYIRSA IESARKAVEL 120 SPNSIEFAHF YANLLYEAAS DGREYEEVLQ ECHRALSIEN PIDPAKDSLQ DESQHKILTP 180 EARIANVQDE LRSLIQKSNL GSLSTWMKHL RNGEGEFRLF DMRKMAEDPI ESNLVQTRRP 240 NEIKKATKTL EERRKEIEVR VAAGRLLQQK SESSSVDSVN SKGSDPALGS GQRSVERRKH 300 GNARKNDSTV ERRDRVRSYW ESTGKEMKKE LLRIKVSDLK SHFSASKDGD ANDIITEALS 360 FCEANKTWRF WVCCKCSEKF KDSESYMQHI VGEHIGNVLP KMQMVLPQSL DSERIEMLLT 420 SPWKPLDFPA AVKLRCSQQK IQNTEFNEFY AEDYMDDGDD CFQDAWNDTS PEKEKIGDAC 480 NGYEKNESEK GRLPNPFYLP DEWPISDDPE R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013630538.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013615265.1 | 0.0 | PREDICTED: uncharacterized protein LOC106321558 | ||||
TrEMBL | A0A0D2ZVR9 | 0.0 | A0A0D2ZVR9_BRAOL; Uncharacterized protein | ||||
STRING | Bo01977s010.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2940 | 3 | 6 |