PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630491.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 267aa    MW: 28749.1 Da    PI: 8.7656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.1e-39511521101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq++ l++el
  XP_013630491.1  51 PCGACKFLRRKCASGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVAALQSEL 145
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     +l++++l
  XP_013630491.1 146 SLVQSQL 152
                     ***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.32950152IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-3951149IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MADQLRSHNT SDSRRKSSAG KRTSLRTTTS SFSSGGAMAE TATTGTGTAS PCGACKFLRR  60
KCASGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI PVNRRHDAVV TISYEAQARL  120
SDPVYGCVST ILALQQQVAA LQSELSLVQS QLVNSRVAMA NVMQQQQQQS HHHQQQQLVV  180
MQQPEYSNNS SASTMNRFTA TAAAVIGYDV MAPANLQHSL QPMPRHQQVT RNQHEDEEES  240
GADFSVAVGS TAVAAEVIFP AEGFHRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-39421532112LOB family transfactor Ramosa2.1
5ly0_B2e-39421532112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630491.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891850.0AC189185.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630491.10.0PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV31e-138LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A3P6AZN00.0A0A3P6AZN0_BRAOL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30003011e-140(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-103LOB domain-containing protein 20