PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013630451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 253aa MW: 27445.3 Da PI: 6.6873 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 78.3 | 9.6e-25 | 161 | 223 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klk+e+ XP_013630451.1 161 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTSENQSLRDELQRLSGECEKLKTEN 223 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 9.8E-11 | 1 | 34 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 6.2E-21 | 158 | 221 | No hit | No description |
SMART | SM00338 | 4.3E-23 | 161 | 225 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-22 | 161 | 223 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.61 | 163 | 226 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.27E-12 | 164 | 220 | No hit | No description |
CDD | cd14702 | 7.13E-21 | 166 | 216 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 168 | 183 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MWGAQHHMMP PYGTPVPYPA MYPPGTVYAH PGMPMPQASG PTNTETAKAQ APGKKPKGNS 60 KRKSGGGEKV LSGSGNDAVS QSEESVTAGS SDENDDNANH QEQGSLRKPS FGQMLADASS 120 QSNTTGEIQG SMPMKPVAPG TNLNMGMELW SSQTGVAVKD ERELKRQKRK QSNRESARRS 180 RLRKQAECEQ LQQRVESLTS ENQSLRDELQ RLSGECEKLK TENNTIQDEL VRVHGPEAVA 240 NLEQNADGSK DGE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 183 | RRSRLRK |
2 | 177 | 184 | RRSRLRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013630451.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X83921 | 0.0 | X83921.1 B.napus mRNA for G-Box binding factor 1B (partial). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013630451.1 | 0.0 | PREDICTED: G-box-binding factor 1-like isoform X2 | ||||
Swissprot | P42774 | 1e-146 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A3P6B1M1 | 0.0 | A0A3P6B1M1_BRAOL; Uncharacterized protein | ||||
STRING | Bra010572.1-P | 1e-180 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 1e-146 | G-box binding factor 1 |