PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013630448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 313aa MW: 33733.1 Da PI: 6.5261 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 77.8 | 1.4e-24 | 221 | 283 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klk+e+ XP_013630448.1 221 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTSENQSLRDELQRLSGECEKLKTEN 283 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 6.6E-30 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 9.1E-21 | 218 | 281 | No hit | No description |
SMART | SM00338 | 4.3E-23 | 221 | 285 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.1E-22 | 221 | 283 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.61 | 223 | 286 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.46E-12 | 224 | 280 | No hit | No description |
CDD | cd14702 | 3.71E-23 | 226 | 276 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 228 | 243 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGTSEEKTPF KPSKPASSAQ DTPPTPYADW SNSMQAYYGG GGTPSPFFPS PVGSPSPHPY 60 MWGAQHHMMP PYGTPVPYPA MYPPGTVYAH PGMPMPQASG PTNTETAKAQ APGKKPKGNS 120 KRKSGGGEKV LSGSGNDAVS QSEESVTAGS SDENDDNANH QEQGSLRKPS FGQMLADASS 180 QSNTTGEIQG SMPMKPVAPG TNLNMGMELW SSQTGVAVKD ERELKRQKRK QSNRESARRS 240 RLRKQAECEQ LQQRVESLTS ENQSLRDELQ RLSGECEKLK TENNTIQDEL VRVHGPEAVA 300 NLEQNADGSK DGE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 243 | RRSRLRK |
2 | 237 | 244 | RRSRLRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013630448.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X83921 | 0.0 | X83921.1 B.napus mRNA for G-Box binding factor 1B (partial). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013630448.1 | 0.0 | PREDICTED: G-box-binding factor 1-like isoform X1 | ||||
Refseq | XP_013630449.1 | 0.0 | PREDICTED: G-box-binding factor 1-like isoform X1 | ||||
Refseq | XP_013630450.1 | 0.0 | PREDICTED: G-box-binding factor 1-like isoform X1 | ||||
Refseq | XP_013685616.1 | 0.0 | G-box-binding factor 1-like | ||||
Refseq | XP_013685618.1 | 0.0 | G-box-binding factor 1-like | ||||
Refseq | XP_013685619.1 | 0.0 | G-box-binding factor 1-like | ||||
Refseq | XP_022555745.1 | 0.0 | G-box-binding factor 1-like | ||||
Swissprot | P42774 | 0.0 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A3P6B1M1 | 0.0 | A0A3P6B1M1_BRAOL; Uncharacterized protein | ||||
STRING | Bra010572.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7274 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 1e-167 | G-box binding factor 1 |