PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013630436.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 916aa MW: 101274 Da PI: 5.2921

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013630436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.5	1.8e-25	560	640	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg..............................vclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lg vc+T+LKriCRq+GI+RWP+Rki+++ XP_013630436.1 560 EKNVSLSVLQQHFSGSLKDAAKSLGgeistvslrmdafllpdklfltlefvsnlaVCPTTLKRICRQHGIMRWPSRKINKV 640 89*****************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	1.8E-24	562	640	IPR003035	RWP-RK domain
PROSITE profile	PS51519	13.378	570	660	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.11E-22	807	901	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-23	814	895	No hit	No description
SMART	SM00666	5.5E-24	816	898	IPR000270	PB1 domain
PROSITE profile	PS51745	22.018	816	898	IPR000270	PB1 domain
CDD	cd06407	7.24E-36	817	897	No hit	No description
Pfam	PF00564	2.3E-17	818	897	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MEHPFASRDK VFGYQDMSTE EMDGFSFGSG VRNLISDDMF NSSSNSELMN FDSFSTWCNS 60 PSSATDILFA QYGLSTTSQP MPFGAITSSG LTRSFHDLES SYYGEERLSI QETSSQFHRS 120 FDGDELTGKR RRVAIPNLMN CTIPRSLSHS LDEKMLKALS LFLESSGSGE GILAQVWTPI 180 KIGDQHVLST CDQAYLLDPR LSQYREVSRK FTFASEANQC SFPGLPGRVF ISGVPEWTSN 240 VVYYKTDEYL RMKHAIDNEV RGSIAIPILE ASGTTCCAVM ELVTSKEKPN FDTEMDSVCR 300 ALQAVNLRTS ASPRPQFLSS NQRDALAEIQ DVLRAVCHAH RLPLALAWIP CSYGKGGKNQ 360 SGESCVLCVE ETACYVNDTE MEGFVHVCLE HCLRAKEGIV GKAFVSNQPF FASDVKAYDI 420 SEYPLVQHAR KYGLNAAVAI KLRSTYTGED DYILELFLPV NMKGSLEQQL LLDSLSGTMQ 480 RICRTLRTVS DVGETNKEVS KAKCSGNFRT MLSDSELNST RNIFSDMSSD KDNSSAGSQG 540 TYEQEMSKAR TQEKKKSTTE KNVSLSVLQQ HFSGSLKDAA KSLGGEISTV SLRMDAFLLP 600 DKLFLTLEFV SNLAVCPTTL KRICRQHGIM RWPSRKINKV NRSLRKIQTV LDSVQGVEGG 660 LKFDSATGEF VAVCPFIKEL DTQKDPVRGQ EDVAAQDTSF ELLEAKSVDN EIKLEEDIIT 720 NGSFVEVNAS GQQWAWMAEQ SSFHCSEGIK NNGNLSSQAI RCSGSINEPN QSVSCSMSGS 780 SNGSGAVMLR SSSTSMDDSN QVRTQKSNSS ESGSTKLTVK ATYREDTIRF KFVPSLGCSQ 840 LYKEVGKRFK LQEESFQLKY LDDEEEWVML VTDSDLQECL EILYGMGKHT VKFLVRDLPA 900 PIGSSAGSNC YLGTGL

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MEHPFASRDK VFGYQDMSTE EMDGFSFGSG VRNLISDDMF NSSSNSELMN FDSFSTWCNS  60
PSSATDILFA QYGLSTTSQP MPFGAITSSG LTRSFHDLES SYYGEERLSI QETSSQFHRS  120
FDGDELTGKR RRVAIPNLMN CTIPRSLSHS LDEKMLKALS LFLESSGSGE GILAQVWTPI  180
KIGDQHVLST CDQAYLLDPR LSQYREVSRK FTFASEANQC SFPGLPGRVF ISGVPEWTSN  240
VVYYKTDEYL RMKHAIDNEV RGSIAIPILE ASGTTCCAVM ELVTSKEKPN FDTEMDSVCR  300
ALQAVNLRTS ASPRPQFLSS NQRDALAEIQ DVLRAVCHAH RLPLALAWIP CSYGKGGKNQ  360
SGESCVLCVE ETACYVNDTE MEGFVHVCLE HCLRAKEGIV GKAFVSNQPF FASDVKAYDI  420
SEYPLVQHAR KYGLNAAVAI KLRSTYTGED DYILELFLPV NMKGSLEQQL LLDSLSGTMQ  480
RICRTLRTVS DVGETNKEVS KAKCSGNFRT MLSDSELNST RNIFSDMSSD KDNSSAGSQG  540
TYEQEMSKAR TQEKKKSTTE KNVSLSVLQQ HFSGSLKDAA KSLGGEISTV SLRMDAFLLP  600
DKLFLTLEFV SNLAVCPTTL KRICRQHGIM RWPSRKINKV NRSLRKIQTV LDSVQGVEGG  660
LKFDSATGEF VAVCPFIKEL DTQKDPVRGQ EDVAAQDTSF ELLEAKSVDN EIKLEEDIIT  720
NGSFVEVNAS GQQWAWMAEQ SSFHCSEGIK NNGNLSSQAI RCSGSINEPN QSVSCSMSGS  780
SNGSGAVMLR SSSTSMDDSN QVRTQKSNSS ESGSTKLTVK ATYREDTIRF KFVPSLGCSQ  840
LYKEVGKRFK LQEESFQLKY LDDEEEWVML VTDSDLQECL EILYGMGKHT VKFLVRDLPA  900
PIGSSAGSNC YLGTGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	132	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013630436.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY102562	1e-169	AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY102563	1e-169	AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY649251	1e-169	AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630436.1	0.0	PREDICTED: protein NLP8-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A3N6QRN5	0.0	A0A3N6QRN5_BRACR; Uncharacterized protein
STRING	Bo3g036620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]