PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630391.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 670aa    MW: 73987.3 Da    PI: 7.114
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630391.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094705071954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  XP_013630391.1 470 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 507
                     664559******************************88 PP
2BELL122.51.8e-39328399172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  XP_013630391.1 328 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQL 399
                     589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-76259397IPR006563POX domain
PfamPF075261.3E-49264396IPR006563POX domain
PROSITE profilePS5007112.519448511IPR001356Homeobox domain
CDDcd000864.44E-12451512No hitNo description
SMARTSM003891.2E-9451515IPR001356Homeobox domain
SuperFamilySSF466892.18E-17452518IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-29454517IPR009057Homeodomain-like
PfamPF059203.3E-18468507IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MSQDYHHHHH QQHQGGIISF SNGFDRLNST SLTAQQKQEH QRIKMDEESS VAGSSIPVYE  60
TAGILSVMFN FPGSSGAVGG GDLDHDQSFR SNRQFLEKQH QNIPGDSAAA MQLFLMNPPQ  120
PPQQPPSPAS TTTTRSHHNN SSTLHMLLPN PSHQQSYTNT MSMHQIPHQH HHQQLTWQSP  180
SSSDHHHHHN SQTGGQGLSL SLSSSLEAAA KAEEYRNIYY GNNSSNTSSH HQHSQFKTLQ  240
ADYSQHQFRS SPAASSSSIG AINIIRNSRY TTATQELLEE FCTVGRGFSK KSKLTNSSNP  300
NTSGGDGGSG SPSSAGAMTD QPPLSASDRI EHQRRKVKLL TMLEEVDRRY NHYCEQMQMV  360
VNSFDIVMGH GAALPYTALA QKAMSRHFRC LKDAVAAQLR QSCELLGDKD AAGISSSGLT  420
KGETPRLRLL EQSLRQQRAF HQMGMMEQDA WRPQRGLPER SVNILRAWLF EHFLHPYPSD  480
ADKHLLARQT GLSRNQVSNW FINARVRLWK PMVEEMYQQE SKELEENEQD QETINSNSDK  540
STKPNNDDSN FTPVRTTSQT SMTAAQSATT APDADAAVAT GHRLRSSSDI NAYENDPSSS  600
CTNVAAVSSY AGSTAFSAVA TCQKGIGGFD DTDMDGGNAI RFGTNPTGDV SLTLGLRHVS  660
NVPDQRFFMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16457515563Homeobox protein Meis2
3k2a_B1e-16457515563Homeobox protein Meis2
4xrm_A2e-16457515563Homeobox protein Meis2
4xrm_B2e-16457515563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630391.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
GenBankAY0504590.0AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630391.10.0PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A3P6BIA10.0A0A3P6BIA1_BRAOL; Uncharacterized protein
STRINGBo3g153820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]