PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013630341.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 353aa MW: 39342.7 Da PI: 9.308

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013630341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.7	1.2e-21	54	145	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++ +++++qC++k+e+l+kry+ + +++++ ++ +s++++++++ea XP_013630341.1 54 CWSLEETIALIDGYRDKWHALNRGNLKANHWEEVAEAVagncPGVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFVSSWVHYKRMEA 145 7***********************************88544444599*********************977999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0031	51	117	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-19	53	146	No hit	No description
PROSITE profile	PS50090	6.214	55	115	IPR017877	Myb-like domain
SMART	SM00595	7.3E-14	62	151	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MSDPDSPLEQ DPIQDPLPVR NQSPPPQPDD SVTDLKVAST PAVAKNSRRL PPPCWSLEET 60 IALIDGYRDK WHALNRGNLK ANHWEEVAEA VAGNCPGVTP KKTAVQCRHK MEKLRKRYRT 120 EIQRARSVPV ARFVSSWVHY KRMEAMEDRP ESKPGGGDEE RAELYGGGGS VARSTPRFFN 180 RNGTAGGSSS SGGIRIRIPT GVSIAQPGPR FPGKIDPKYT ASASSRLGRV GGGTSYGARG 240 VRIQEGEERA GKRGREMMMM MMTTEEEEEE ESDDPMVEIA SAIKLLGDTL LRTEEKKMEM 300 TREIEAMRME MEMKRTKMIL ESQQRIVEAF AKSMSENLEE KKKTARRVSS LPP

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MSDPDSPLEQ DPIQDPLPVR NQSPPPQPDD SVTDLKVAST PAVAKNSRRL PPPCWSLEET  60
IALIDGYRDK WHALNRGNLK ANHWEEVAEA VAGNCPGVTP KKTAVQCRHK MEKLRKRYRT  120
EIQRARSVPV ARFVSSWVHY KRMEAMEDRP ESKPGGGDEE RAELYGGGGS VARSTPRFFN  180
RNGTAGGSSS SGGIRIRIPT GVSIAQPGPR FPGKIDPKYT ASASSRLGRV GGGTSYGARG  240
VRIQEGEERA GKRGREMMMM MMTTEEEEEE ESDDPMVEIA SAIKLLGDTL LRTEEKKMEM  300
TREIEAMRME MEMKRTKMIL ESQQRIVEAF AKSMSENLEE KKKTARRVSS LPP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013630341.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189399	0.0	AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630341.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A0D3B6R1	0.0	A0A0D3B6R1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AD99	0.0	A0A3P6AD99_BRAOL; Uncharacterized protein
STRING	Bo3g037360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-134	Trihelix family protein