PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013630336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 282aa MW: 30677.9 Da PI: 7.0899 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.4 | 8e-16 | 31 | 91 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ XP_013630336.1 31 RSRWSPKPEQILILESIFNSgMVNPPKEETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 91 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.4 | 8.3e-35 | 30 | 93 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++G+++d+NVfyWFQNr++R+r++q XP_013630336.1 30 VRSRWSPKPEQILILESIFNSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 93 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.24E-14 | 22 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-9 | 25 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.548 | 27 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-6 | 29 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-13 | 31 | 91 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDQEQTQHSP TGHSHSPSSP ASGSTSTETV RSRWSPKPEQ ILILESIFNS GMVNPPKEET 60 VRIRKMLEKF GAVGDANVFY WFQNRRSRSR RRQRQLQAAA AAAAVTTNTC DQTMMVNTSL 120 PQYSGADLGF GGCSTSSNYL YGGPSSQTPS FFLGLSSSPP CSSSSSTSSS ASSSTSSYGG 180 GCDNHINNGM ENLLAMSGQM GYHEASQHHY QHHSSNLSPM MCPSDQSSSY DHYQQGLTVF 240 INGVPTEVTS GAYNMVKLIS WFQDRHELAL LLGCVVLQQM PY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013630336.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC009327 | 0.0 | AC009327.8 Arabidopsis thaliana chromosome III BAC T12J13 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013630336.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 11 isoform X2 | ||||
Swissprot | Q6X7J3 | 1e-107 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A3P6GHI7 | 0.0 | A0A3P6GHI7_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g153650.1 | 1e-121 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.2 | 1e-100 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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