PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630324.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 456aa    MW: 51242.8 Da    PI: 7.8243
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0597119123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_013630324.1  97 FICEICNKGFQRDQNLQLHKRGH 119
                     89******************988 PP
2zf-C2H213.60.0002174196123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_013630324.1 174 WKCDKCSKKYAVQSDWKAHAKTC 196
                     58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-696119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-696119No hitNo description
SMARTSM003550.02297119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.80397119IPR007087Zinc finger, C2H2
PfamPF121712.9E-597119IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM00355100139169IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4162195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-6169194No hitNo description
SMARTSM00355150174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MMMNKDMLYH HQQQQVEENM SNLTSASGDR ASVSSGNRTE TSGSNFHYNT NPNQQQEEQC  60
LAPQPSQKKK RNQPGNPDPE AEVLALSPKT LMATNRFICE ICNKGFQRDQ NLQLHKRGHN  120
LPWKLKQRSN KDVIRKKVYV CPEPNCVHHH PSRALGDLTG IKKHFFRKHG EKKWKCDKCS  180
KKYAVQSDWK AHAKTCGTKE YKCDCGTLFS RRDSFITHRA FCDALAEESA RAIPNPILIP  240
SSSPHQTQHN INFSSSSQNI TSHNNNPHGH DELPMKQEEP HHHFHNIPPW LISSNPNPNG  300
NNANYFPLAS ASANFQHPSP AMSATALLQK AAQMGPSKST TTPEEDEKSS YNKLITTTMA  360
ASMMTSPSEP GFGFQDYYMM NHHAHHHDGV GEAFDGGFNA GDERNDVVDD SGGETRDFLG  420
LRPLMSHNEM LSFANNLGNC INTSASEQQQ RYSHQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36170231364Zinc finger protein JACKDAW
5b3h_F6e-36170231364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123136KLKQRSNKDVIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.27250.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630324.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529940.0AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630324.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D3BN380.0A0A0D3BN38_BRAOL; Uncharacterized protein
STRINGBo3g184730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]