PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013630148.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 248aa MW: 27051.4 Da PI: 4.4657

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013630148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.5e-05	195	232	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + Lr+++P + ++ a++L +Av+Y+ksL XP_013630148.1 195 RKKKMKKMMGMLRKIVPGG-----EEMNTASVLDEAVQYLKSL 232 77899999999****85.....69*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.198	183	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-7	195	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-7	196	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MQNNQYPHFS DEMGDGNMNF PYASSSFDDL FPPCAKLPFH GVELQPSPVC PKNFVIFDQT 60 YDHSQVMYHP GLTPRLVNSG LASTFENEYA GGSYGYNYGQ EVYGNYGGGQ EVLSSSYQED 120 PNEIDALLST DEDNEGEEDG GDSEEVSTAR NASRDYGNTS AESCCSSYGY NSSRRKQSSS 180 ASAASSSNND GKGGRKKKMK KMMGMLRKIV PGGEEMNTAS VLDEAVQYLK SLKLEAQKLG 240 VGHFSNQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	199	RRKQSSSASAASSSNNDGKGGRKKKMK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013630148.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189366	0.0	AC189366.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046G20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630148.1	0.0	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	1e-106	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A0D3BIZ2	0.0	A0A0D3BIZ2_BRAOL; Uncharacterized protein
STRING	Bo3g146500.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	6e-98	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]