PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013629936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 275aa MW: 29171.4 Da PI: 7.7209 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.6 | 5.6e-40 | 53 | 154 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael XP_013629936.1 53 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 147 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 +l++++l XP_013629936.1 148 SLVQSQL 154 ***9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.263 | 52 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-39 | 53 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MADQQRSGHN TSDSRRKLAA GRRTSQHNTT SSLSSGGGAM AAAATTGTGT VSPCGACKFL 60 RRKCVSGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLH HIPVNRRHDA VVTISYEAQA 120 RLSDPVYGCV STILALQQQV ASLQAELSLV QSQLINSRVA MANVMQQQQN HHQQHQQLVV 180 MQQPEYSNNS SASTTLAGAA MNSFTATAEA AAAVSYDVMA PANLEHPLQH VPRHQQGSGN 240 QHEDEEESGT EFSLAAGSTA LAAEVIYPAE GFHRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-40 | 43 | 156 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-40 | 43 | 156 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013629936.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473854 | 0.0 | AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds. | |||
GenBank | AK118291 | 0.0 | AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13. | |||
GenBank | BT008589 | 0.0 | BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013629936.1 | 0.0 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 1e-145 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A0D3AFT1 | 0.0 | A0A0D3AFT1_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g153580.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-105 | LOB domain-containing protein 20 |