PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013629839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 376aa MW: 40585.9 Da PI: 8.2006 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 63.5 | 4e-20 | 270 | 332 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NReAA rsR+RK+ae++eL++ ++L aeN +L+ e+++lk + ++l+se+ XP_013629839.1 270 ERELKRQRRKQSNREAAHRSRLRKQAECDELAQYTEVLNAENASLRAEMNRLKSQREELTSEN 332 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.8E-19 | 1 | 83 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 6.1E-28 | 123 | 237 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.8E-16 | 263 | 329 | No hit | No description |
Pfam | PF00170 | 6.8E-18 | 270 | 332 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.5E-17 | 270 | 334 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.53 | 272 | 335 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-10 | 273 | 329 | No hit | No description |
CDD | cd14702 | 2.08E-18 | 275 | 324 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 277 | 292 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MASSEMEKSS KEKEPKQPSS SSAPPSSQAS SAPMQPHGFV TSSPQPHPYM WGVQQMMPPY 60 GAPPHPYVTM YPPGGMYAHP SMPPEGSYPY SPYAMHSPNG MTVASGNTTG GTEGDSKRSD 120 VKEKLPIRRS KRILNMMRGK NSGASANNGA NSKSGESASD GSSEGSDANY QNDSGSRQDR 180 KDAASENGGC ANGPQKGSVG TPLPTVSQKV PIMPNTAPGV PGPPTNLNIG MGYWGAPIPG 240 MHGKVSTPVP GVFAQMSRDG GHSQPWLQDE RELKRQRRKQ SNREAAHRSR LRKQAECDEL 300 AQYTEVLNAE NASLRAEMNR LKSQREELTS ENTSLKDLLL SFPPLEGINM DKDDQEPDTN 360 QTGFIETKFV SYKDST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013629839.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013629839.1 | 0.0 | PREDICTED: transcription factor HBP-1a-like isoform X3 | ||||
Swissprot | Q501B2 | 0.0 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A0D3B502 | 0.0 | A0A0D3B502_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g028300.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 1e-170 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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