PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629836.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 392aa    MW: 42205.6 Da    PI: 7.272
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.44.3e-20286348163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq+NReAA rsR+RK+ae++eL++  ++L aeN +L+ e+++lk + ++l+se+
  XP_013629836.1 286 ERELKRQRRKQSNREAAHRSRLRKQAECDELAQYTEVLNAENASLRAEMNRLKSQREELTSEN 348
                     89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-27199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.7E-28139253No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-16279345No hitNo description
SMARTSM003381.5E-17286350IPR004827Basic-leucine zipper domain
PfamPF001707.3E-18286348IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.53288351IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-10289345No hitNo description
CDDcd147021.48E-18291340No hitNo description
PROSITE patternPS000360293308IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MASSEMEKSS KEKEPKQPSS SSAPPSSQEP SSSVSAGPDW SGFQASSAPM QPHGFVTSSP  60
QPHPYMWGVQ QMMPPYGAPP HPYVTMYPPG GMYAHPSMPP EGSYPYSPYA MHSPNGMTVA  120
SGNTTGGTEG DSKRSDVKEK LPIRRSKRIL NMMRGKNSGA SANNGANSKS GESASDGSSE  180
GSDANYQNDS GSRQDRKDAA SENGGCANGP QKGSVGTPLP TVSQKVPIMP NTAPGVPGPP  240
TNLNIGMGYW GAPIPGMHGK VSTPVPGVFA QMSRDGGHSQ PWLQDERELK RQRRKQSNRE  300
AAHRSRLRKQ AECDELAQYT EVLNAENASL RAEMNRLKSQ REELTSENTS LKDLLLSFPP  360
LEGINMDKDD QEPDTNQTGF IETKFVSYKD ST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629836.10.0PREDICTED: transcription factor HBP-1a-like isoform X1
RefseqXP_013629837.10.0PREDICTED: transcription factor HBP-1a-like isoform X1
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0D3B5020.0A0A0D3B502_BRAOL; Uncharacterized protein
STRINGBo3g028300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-177basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]