PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013629804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 677aa MW: 73969.1 Da PI: 7.0136 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 396 | 433 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_013629804.1 396 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 433 554459******************************88 PP | |||||||
2 | BELL | 114.8 | 4.5e-37 | 251 | 326 | 1 | 72 |
BELL 1 erqelqkkkakLlsllee....VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL s+l+e V++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi XP_013629804.1 251 ERQEIQMKKAKLSSMLHEgnekVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 326 79*************9654445*****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 8.5E-71 | 171 | 324 | IPR006563 | POX domain |
Pfam | PF07526 | 9.6E-44 | 177 | 323 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 374 | 437 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 377 | 441 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.03E-12 | 377 | 438 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-17 | 378 | 444 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-29 | 380 | 443 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 394 | 433 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MAAYFHGNPP EFSAGTDGGL QTLILMNPTT YVPYTQQDDD SNNSSNNNNN TNNNSFVFLD 60 SHAPPQNANQ QFVGIPLSGH EAASITAADN ISVLHGYPPR VQCSLYGSHQ VDPTHHQAAC 120 ETPRAQRGLS LTLSSQQQKQ QHRQTLHHVG FGSGPGEDIR VGSGSTASGV TNGIANLVSS 180 KYLKAAQELL DEVVKADSND INTKSQLFSS KKGTSVTDTK AVGESSTGAR EGSDGGGEAS 240 GKRTMELGTT ERQEIQMKKA KLSSMLHEGN EKVEQRYRQY HQQMQMVISS FEQAAGIGSA 300 KSYTSLALKT ISRQFRCLKE AIAGQIKAAN KSLGEEDSVS GVGRFEGSRL KFVDHHLRQQ 360 RALQQLGMIQ HPSNNAWRPQ RGLPERAVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR 420 SQVSNWFINA RVRLWKPMVE EMYAEEMKEQ GKNMGSMEKT PNLDENIDDS ASKSTSNQEK 480 IPMGGGGLDD YHLNPSHNGD LEGVTGMQGS PKRLRTSDDT MMQPINEGFS SNEKITMKIL 540 EERQGIRSDG GYPFMGSFVQ YQMDEMSRFN VAVSDQELLT QRFSGNINGV SLTLGLPHCD 600 SLSSTHHQGF MQTHHGIQIG RSVKIGETEE YGNSAINGGS GSAATAHSSA AAAAAYNGMN 660 IQNQKRYVAQ LLPDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 6e-17 | 383 | 440 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 6e-17 | 383 | 440 | 1 | 58 | Homeobox protein Meis1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013629804.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013629804.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 isoform X1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0D3B556 | 0.0 | A0A0D3B556_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g029830.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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