PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629747.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 475aa    MW: 54005.4 Da    PI: 8.2464
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind23.81.2e-07943236
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHH CS
    HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeeef 36
                    F   +ye+++d++l+++isws++++sfv++d++e+
  XP_013629747.1  9 FYAGVYEVVDDPSLDSIISWSKSNKSFVIWDSKEL 43
                    77889***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004150.0097575IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.63E-7644IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-7644IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-4944IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSWMGMSQFY AGVYEVVDDP SLDSIISWSK SNKSFVIWDS KELVFRDASA TSCHSLSAIF  60
VESEFESSRP SVVAEQGWGD VFQTCSTVKS VPSLLRGCEA DCATFIIPRA DQRPWSARIG  120
FYCVYESLFE KDSKLWFPIP RLITSYCSRR DIALTKLMIG TARIAVALMV MAAEADVSMS  180
VRFFEELTQT QPKLNGIYAV QMRSGLHILS GHPSRTKYWQ RSYFYVRADK IAFEEPPGDN  240
SQFLWSHLDR PNTVVYPEDF WYEVHKIMAL SEQQWKSFDR IRIPNQQRRI AKVDWASNIP  300
CEETKGKRMP LPLMGKITRA YPSYSDIGCR EFQFHDRRKI RSTTPLRNKP PNKAKVRSEE  360
EEPGPGMSCK EVDHSIDKIG GEGEDVRVEN PKGLTGKKRK RRPKDIVSRS ADDSEELVVS  420
LPAGRHDGPL VNDQATCSNL MRQIRGGTRR MPEVTELAFL DNFSESARAD STAVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390399PKGLTGKKRK
2396401KKRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629747.10.0PREDICTED: uncharacterized protein LOC106335701
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.11e-10Winged helix-turn-helix transcription repressor DNA-binding