PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013629484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 846aa MW: 93417.9 Da PI: 6.5096 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 8.1e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_013629484.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WND 219 99*****************************96555555..8************************************************..788 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_013629484.1 220 KNQLLLGIRRA 230 88899999986 PP | |||||||
2 | Auxin_resp | 118.2 | 6.6e-39 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rW nS+Wrs+k XP_013629484.1 255 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPARWANSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.19E-48 | 114 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-41 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.24E-21 | 128 | 229 | No hit | No description |
SMART | SM01019 | 4.9E-23 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.266 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-21 | 129 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.7E-34 | 255 | 338 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.55E-7 | 701 | 782 | No hit | No description |
PROSITE profile | PS51745 | 23.837 | 707 | 791 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MRLSSAGFNP HPHEVTGEKR VLNSELWHAC AGPLVSLPPL GSRVVYFPQG HSEQVAASTN 60 KEVDAHTPNY PSLQPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNGQEQK YPYLAAELGV 120 PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQQPPAQELM ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA HRPQTVMPSS 240 VLSSDSMHLG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ICDLDPARWA NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP 360 LTTFPMYPSP FPLRLKRPWP SVLPSFHEDD MGMGMGMSSP LMWDRGLQPM NFQGMGVNPW 420 MQPRPLDASG LLGMQNDAYQ AMAAAALQDM RGIDPAKAAA SLLQFQNPSG FSVQPPSLVQ 480 PQMLQQQLTQ QHQQQLSQQQ VVDNHNLSAS SAAMSQSNTS LLQSMTPLCH QQSFSDTNGG 540 NNPITQLHTL LSNFPQDESS QLLNLTRTNS AMTSSGWPSK RPAIDSSFQH STAVNNNQSV 600 MEQLGQSHTS NVSPNAVSLP PFPSGQEENP SDPHSHLLFG VNIDSSSLLI PNGMSNLRSI 660 GIEGGDSTTL PFTSSTFNNE FSGTMTTPSS CIEEPGFLQP SENQQSNTFV KVHKSGSFGR 720 SLDITKFSSY NELRSELARM FGLEGQLEDP VRSGWQLVFV DRENDVLLLG DDPWPEFVSS 780 VWCIKILSPQ EVQQMGKRGL ELLNSAPSSN NVDKVPSNGN CDDLGNRSDP RSLGNGIASV 840 GGSFNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 18 | 359 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013629484.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979468 | 0.0 | JN979468.1 Brassica rapa subsp. pekinensis auxin response factor 6 (ARF6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013629484.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X3 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A0D3BJ39 | 0.0 | A0A0D3BJ39_BRAOL; Auxin response factor | ||||
STRING | Bo3g148950.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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