PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013629392.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 518aa MW: 57743.5 Da PI: 9.1913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013629392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.8e-05	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_013629392.1 99 FVCEICNKGFQRDQNLQLHKRGH 121 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-5	98	121	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.84E-6	98	121	No hit	No description
Pfam	PF12171	4.5E-5	99	121	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	99	121	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.907	99	121	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	101	121	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	141	171	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.84E-6	171	196	No hit	No description
SMART	SM00355	180	176	196	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MMSKDILLHQ QVQQQQQEEN MSILTSASGD QTSASSGIRT EASGSNYFPH HQQQQEQQQQ 60 FFVPESQPQK KRRNQPGNPD PESEVIALSP KTLMARNRFV CEICNKGFQR DQNLQLHKRG 120 HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK 180 CSKKYAVQSD CKAHSKTCGT KEYRCDCGTI FSRRDSFITH RAFCEALAKE TAREVVIPQE 240 QNHQPNPILV HQSTFHHQHH QAQPNMNFSS SSPSSHNIIN TLHFETNNNG TNNSNTSSNH 300 LHTFPVKKEQ QQSNDHMINY HHQSIPPWLA PHDLTFPNPN PNNGGGGLFS LAAFPAMSAT 360 ALLQKAAQMG STKTPPLPPT TDLERSAHHN TLTTTMAAMM TSPSGFISSN NNNQVFLQGY 420 HGGEEAFDHT FSALLRTNVD TTTAGSDTKK RGGGGGVGEG LTRDFLGLRP LMSHNEILSI 480 AGLGNCISGA APDQLRPKPW KGTQVESTKD RDASRFAW

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MMSKDILLHQ QVQQQQQEEN MSILTSASGD QTSASSGIRT EASGSNYFPH HQQQQEQQQQ  60
FFVPESQPQK KRRNQPGNPD PESEVIALSP KTLMARNRFV CEICNKGFQR DQNLQLHKRG  120
HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK  180
CSKKYAVQSD CKAHSKTCGT KEYRCDCGTI FSRRDSFITH RAFCEALAKE TAREVVIPQE  240
QNHQPNPILV HQSTFHHQHH QAQPNMNFSS SSPSSHNIIN TLHFETNNNG TNNSNTSSNH  300
LHTFPVKKEQ QQSNDHMINY HHQSIPPWLA PHDLTFPNPN PNNGGGGLFS LAAFPAMSAT  360
ALLQKAAQMG STKTPPLPPT TDLERSAHHN TLTTTMAAMM TSPSGFISSN NNNQVFLQGY  420
HGGEEAFDHT FSALLRTNVD TTTAGSDTKK RGGGGGVGEG LTRDFLGLRP LMSHNEILSI  480
AGLGNCISGA APDQLRPKPW KGTQVESTKD RDASRFAW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-31	172	233	3	64	Zinc finger protein JACKDAW
5b3h_F	9e-31	172	233	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	138	KLKQRSNKEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013629392.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF361797	0.0	AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBank	AY091693	0.0	AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013629390.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_013629392.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Swissprot	Q9LRW7	0.0	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A0D3BB63	0.0	A0A0D3BB63_BRAOL; Uncharacterized protein
STRING	Bo3g065750.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	0.0	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]