PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013629276.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 870aa MW: 95648.4 Da PI: 4.8856

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013629276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.5e-28	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ XP_013629276.1 597 EKIIGLEVLQQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 647 7889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	8.8E-4	190	284	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.642	586	667	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-24	600	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.64E-22	762	856	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-22	770	852	No hit	No description
SMART	SM00666	2.3E-27	772	855	IPR000270	PB1 domain
PROSITE profile	PS51745	25.447	772	855	IPR000270	PB1 domain
CDD	cd06407	7.73E-39	773	853	No hit	No description
Pfam	PF00564	1.6E-15	773	853	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence Send to blast
MEDDGGSDGG EGNGGFSPNS SFGAFPEMPM DLDLDELFFD GCWLETTDLK QSEETASASN 60 AMNDNTPFLY FAENSFQENV SNEETERTAN QEPLNQAATS SEEAEKLLLE EAEVARRWWI 120 APRGSEGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK 180 YSSLAKYRHV SETYNFPADE GSTEVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC 240 DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYRPELENI CKALEAVDLR SSSNLKTPST 300 EFLQVYNDFY YVALPEISDF LATVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST 360 IDSACFVLDE QSKCFLEACS EYHLLQGEGM VGKAFKETKL FFVPEVTIFS KTNYALAHHA 420 KVSGLHAALA VPLKSKSNGL VEFVLEFFFP KACIDTEAKQ VMLKSLSVTL QQDFRSSNLV 480 IDKDLELEVV LPDVEDMVLS ESPANGAETE ESLREVHMQD STMIKANEKG KDKKDESKLS 540 SGLDNSQLDS VPNNVPSGAE PGGLRVEAGP STEPASTGGG SMLGSRRPGD KRRSKNEKII 600 GLEVLQQYFA GSLKDAAKSI GVCPTTLKRI CRHHGITRWP SRKIKKVGHS LKKLQVVMDS 660 VQGAQGSLPL DSFYSSFPAL NSPTMSSNGP FLKSKEQLQH LAEDKPAPRS PSSSCSGSST 720 NTANTLQVAE DADAVLKKAH SEAEPHKIIK EPPLLENLAG SSSNKSLRAG GGIKVKATFG 780 EAIIRFTLPP SWGYRELEQE IARRFSIDNV SWFDLKYLDD DKELVLLKCE GDLEECIDIH 840 RSSQSQTIKI SLHGAFQVKL GGSFGSTGAS

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence Send to blast

MEDDGGSDGG EGNGGFSPNS SFGAFPEMPM DLDLDELFFD GCWLETTDLK QSEETASASN  60
AMNDNTPFLY FAENSFQENV SNEETERTAN QEPLNQAATS SEEAEKLLLE EAEVARRWWI  120
APRGSEGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YSSLAKYRHV SETYNFPADE GSTEVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC  240
DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYRPELENI CKALEAVDLR SSSNLKTPST  300
EFLQVYNDFY YVALPEISDF LATVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST  360
IDSACFVLDE QSKCFLEACS EYHLLQGEGM VGKAFKETKL FFVPEVTIFS KTNYALAHHA  420
KVSGLHAALA VPLKSKSNGL VEFVLEFFFP KACIDTEAKQ VMLKSLSVTL QQDFRSSNLV  480
IDKDLELEVV LPDVEDMVLS ESPANGAETE ESLREVHMQD STMIKANEKG KDKKDESKLS  540
SGLDNSQLDS VPNNVPSGAE PGGLRVEAGP STEPASTGGG SMLGSRRPGD KRRSKNEKII  600
GLEVLQQYFA GSLKDAAKSI GVCPTTLKRI CRHHGITRWP SRKIKKVGHS LKKLQVVMDS  660
VQGAQGSLPL DSFYSSFPAL NSPTMSSNGP FLKSKEQLQH LAEDKPAPRS PSSSCSGSST  720
NTANTLQVAE DADAVLKKAH SEAEPHKIIK EPPLLENLAG SSSNKSLRAG GGIKVKATFG  780
EAIIRFTLPP SWGYRELEQE IARRFSIDNV SWFDLKYLDD DKELVLLKCE GDLEECIDIH  840
RSSQSQTIKI SLHGAFQVKL GGSFGSTGAS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013629276.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013629275.1	0.0	PREDICTED: protein NLP1-like
Refseq	XP_013629276.1	0.0	PREDICTED: protein NLP1-like
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	A0A0D3BE80	0.0	A0A0D3BE80_BRAOL; Uncharacterized protein
STRING	Bo3g092260.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]