PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013628862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 234aa MW: 24760.8 Da PI: 10.0296 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.6e-07 | 33 | 56 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C ++ t C++G++C+F+H XP_013628862.1 33 KSKPCTKYFSTSGCPFGENCHFSH 56 7789******************** PP | |||||||
2 | zf-CCCH | 33.8 | 5.7e-11 | 199 | 224 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C +f++ G C +GdrC+FaHg+ XP_013628862.1 199 FKTKMCERFSK-GSCTFGDRCHFAHGE 224 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.009 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.34 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-4 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-7 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 6.72E-14 | 92 | 173 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 2.1E-13 | 102 | 171 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.1E-8 | 102 | 172 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.131 | 103 | 167 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.6E-9 | 105 | 168 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.14E-10 | 105 | 167 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-16 | 193 | 228 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 198 | 224 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.446 | 198 | 225 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-8 | 198 | 228 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 199 | 224 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDTLKRGRPE ANSNGAGFKK SKQEMESTGL GSKSKPCTKY FSTSGCPFGE NCHFSHYVPG 60 GYNAVAQLTN MAPPMPQVSR NMQGRFSGRG DSGPGHVSSF GASATAKISV DASLAGAIIG 120 KGGVSSKQIY RQTGAKLTIQ DHERDPNLKN IELEGTFELI NEASVMVREL IGRLNSAARR 180 PPGGGGGGSE GKPHPGSNFK TKMCERFSKG SCTFGDRCHF AHGEAELRRS GISS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013628862.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353531 | 0.0 | AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628862.1 | 1e-172 | PREDICTED: zinc finger CCCH domain-containing protein 36-like | ||||
Swissprot | Q9C7C3 | 1e-135 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A0D3BAW5 | 1e-171 | A0A0D3BAW5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ALD0 | 1e-171 | A0A3P6ALD0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g064770.1 | 1e-172 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-130 | C3H family protein |
Publications ? help Back to Top | |||
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