PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013628782.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 33873.9 Da PI: 6.6713 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.2 | 2.1e-55 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv+++ ++ +++ +vd +k+ePwdLp+k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tgkdke+++ XP_013628782.1 5 LPPGFRFHPTDEELITHYLCRKVSDTGFTG-KAVVDVDFNKCEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIYQ- 97 79*************************999.88***************999999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfykgrapkgek++Wvmheyrle XP_013628782.1 98 SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-63 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.549 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-28 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT HYLCRKVSDT GFTGKAVVDV DFNKCEPWDL PAKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYQSGV LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ETKQPFKPAK EEWVVCRVFE KSTSAKKPQE QQPQPSFGSP CDASSSMANE 180 FEDIELQNLN SNSSTIDYNH IHQYSQNGVY SQDNTTSTAC LNMNMAANNI TSWSTTNLLG 240 QPLSPINSLL LKAFQIRNSY ININPSTLQQ GVSNIMQNGS SSSQPQPQEE AFNMDSIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-58 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-58 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-58 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-58 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-58 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-58 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013628782.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026658 | 2e-87 | AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24. | |||
GenBank | CP002686 | 2e-87 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628782.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 2e-81 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0D3BBZ1 | 0.0 | A0A0D3BBZ1_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g071500.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5527 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-176 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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