PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013628773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26179.4 Da PI: 9.9008 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.2 | 1.3e-20 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krie+ks rqvtf+kRrng++ KA LSvLC+ vav+i+ss gk+y XP_013628773.1 9 KRIEDKSSRQVTFCKRRNGLIEKARQLSVLCGSSVAVLIVSSIGKVYS 56 79********************************************95 PP | |||||||
2 | K-box | 33.6 | 1.6e-12 | 122 | 196 | 25 | 99 |
K-box 25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +e L++ qR+l ++++++++ L +Le+q +++l+ R++K+el+++ ++ q+kek l++en+ L ++++ XP_013628773.1 122 LSLNELLETVQRKLEAANVDNITVQSLISLEEQSKTALSLTRARKTELMMQLVKSFQEKEKLLRDENTVLASQVA 196 4557889999999*********************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.249 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.2E-24 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-20 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.019 | 111 | 201 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.1E-9 | 125 | 195 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGRRKVEIKR IEDKSSRQVT FCKRRNGLIE KARQLSVLCG SSVAVLIVSS IGKVYSSSSG 60 DSMAKILKHY EVQHADKLKT LCLNIVKTDQ HRGTLFFTAV IALETLRQVS KLDLTEKTQN 120 YLSLNELLET VQRKLEAANV DNITVQSLIS LEEQSKTALS LTRARKTELM MQLVKSFQEK 180 EKLLRDENTV LASQVAKMGK EKEFLETEDE RAMLLEYSSG SNLRETLPLL K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 9e-18 | 1 | 93 | 1 | 95 | MEF2 CHIMERA |
6bz1_B | 9e-18 | 1 | 93 | 1 | 95 | MEF2 CHIMERA |
6bz1_C | 9e-18 | 1 | 93 | 1 | 95 | MEF2 CHIMERA |
6bz1_D | 9e-18 | 1 | 93 | 1 | 95 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in most plant tissues, roots, seedlings, leaves, stems, inflorescences, pollen, siliques and flowers. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013628773.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628773.1 | 1e-165 | PREDICTED: protein MADS AFFECTING FLOWERING 5-like isoform X1 | ||||
Swissprot | Q9FPN7 | 3e-82 | AGL31_ARATH; Agamous-like MADS-box protein AGL31 | ||||
TrEMBL | A0A3P5YIQ4 | 1e-141 | A0A3P5YIQ4_BRACM; Uncharacterized protein | ||||
STRING | Bo3g100540.1 | 1e-133 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM986 | 19 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65070.2 | 2e-96 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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