PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013628738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 32934.2 Da PI: 6.3722 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 1e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l+ +++++G +W++ ++ g++R++k+c++rw +yl XP_013628738.1 15 KGPWLPEEDGKLISYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.3e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l XP_013628738.1 68 RGKFSQEEEETILNLHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.455 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.83E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.247 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-28 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRSPLSADE TGLKKGPWLP EEDGKLISYI HKHGHSSWSA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSQEEEETIL NLHAVLGNKW SMIASHLPGR TDNEIKNFWN THLKKKLIQM 120 GFDPMTHRPR TDDIFSSLSQ LMSLSNLRGL VDLQQQVPFE DQQALLNLQG EMAKLQLLNY 180 LLQAPHLAMS SSNNNNPNEL NILNLLIKEN YNTNNLPSLK TLEENLFSQN NSPIWSHEPP 240 SLNQTMMPSH DPSPLGDDLV LNQASSSHEQ EVAATGSVDW PDHLFDDSMF P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-29 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and flowers. {ECO:0000269|PubMed:24902892}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013628738.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519646 | 1e-179 | AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628738.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9FJP2 | 1e-151 | MYB53_ARATH; Transcription factor MYB53 | ||||
TrEMBL | A0A0D3BEU8 | 0.0 | A0A0D3BEU8_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g099390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 1e-149 | myb domain protein 53 |
Publications ? help Back to Top | |||
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