PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013628677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 848aa MW: 94490 Da PI: 6.8788 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.6 | 2.1e-22 | 159 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ XP_013628677.1 159 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHASEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 250 99*****************************7333.34459************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ XP_013628677.1 251 GELRVGVRRA 260 99*****996 PP | |||||||
2 | Auxin_resp | 120.3 | 1.4e-39 | 285 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++ +++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rW +SkWrsLk XP_013628677.1 285 AWHAISTGTMFTVYYKPRTSPSEFIVPFDQYTESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPTRWAKSKWRSLK 367 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-40 | 155 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-40 | 156 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.69E-20 | 157 | 259 | No hit | No description |
SMART | SM01019 | 1.3E-21 | 159 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.35 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-20 | 159 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.2E-37 | 285 | 367 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-10 | 713 | 807 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.219 | 722 | 806 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.85E-11 | 724 | 799 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence Send to blast |
MASSEVSMKG NRGRGENFSS AGYSDPTVAG EAQKIQSNRS VAAERVVDPE AALYRELWHA 60 CAGPLVTVPR QDDRVFYFPQ GHIEQVEAST NQAAEQQMPL YDLPSKILCR VINVDLKAEA 120 DTDEVYAQIT LLPEPVQDEN AIEKEAPPPP PPRFQVHSFC KTLTASDTST HGGFSVLRRH 180 ADECLPPLDM SRQPPTQELV AKDLHASEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG 240 DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK 300 PRTSPSEFIV PFDQYTESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK 360 SKWRSLKVRW DETTSIPRPD RVSPWKIEPA LSPPALSPVP MPRPKRPRSN LASSTPDSSM 420 RIREGSSKAN MDPLPASGLS RVLQGQEYPT LRTKHVESVE CDAPENSVVW QSSTDDDKVD 480 VVSASRRYEN WISSGRHGPT CTDLLSGFGT NIEPPHGHQI PFYDRLSSSP SVAARKILSD 540 QDGKFEYLAN QWMMHSGLSL KLHESPKVPA ASDASFQGIG NPNYGEYALP RAVTTENAAG 600 NWPIRPRALN YFEEAVHAQA REHVTKRPAV IQEEAAKPRD GNCRLFGIPL VNNVNGTDTT 660 LSQRNNLNDP AGPTQMASPK VQDLSDQSKG SKSTNDHREQ GRPFPVSKPH PKDVQTKTNS 720 CRSCTKVQKQ GIALGRSVDL SKFQNYEELV TELDRLFEFN GELMAPKKDW LIVYTDDEND 780 MMLVGDDPWQ EFCCMVRKIF IYTKEEVRKM NPGTLCCRNE EEPVVGEGSD AKDAKSASNP 840 SLSSAGNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-180 | 52 | 389 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-180 | 52 | 389 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-180 | 52 | 389 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-180 | 52 | 389 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-180 | 52 | 389 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013628677.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ716227 | 0.0 | AJ716227.1 Brassica napus mRNA for putative auxin response factor (ARF2 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628677.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A0D3BFX7 | 0.0 | A0A0D3BFX7_BRAOL; Auxin response factor | ||||
STRING | Bo3g108130.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |