PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628525.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 262aa    MW: 29910.4 Da    PI: 7.774
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628525.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183080155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  XP_013628525.1 30 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 80
                    699*******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.74E-333090No hitNo description
PfamPF008475.5E-133080IPR001471AP2/ERF domain
PROSITE profilePS5103219.8233188IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-193188IPR016177DNA-binding domain
SMARTSM003807.0E-393194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-283189IPR001471AP2/ERF domain
PRINTSPR003674.3E-83243IPR001471AP2/ERF domain
PRINTSPR003674.3E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDNNHTEKME HHQTTQKQKI KRKSKGTNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT  60
FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS LKHQQQQQQN  120
KPASSFVEHN INYTLPATCP TANTTTTLMP LNNVYRPDLS AILQPEADSV QLPYSWPLVS  180
ELNHQVPLAN YRVEEAHGHL NDHNTTDQHS GLADIERQIS ASLYAMNGAT TYYDNMHSEY  240
PIFDPTDPIW DLPSLSQLFC PT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-152397681Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628525.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
SwissprotQ6J9S11e-129RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A0D3B2010.0A0A0D3B201_BRAOL; Uncharacterized protein
STRINGBo3g013830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-109related to AP2 11
Publications ? help Back to Top
  1. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]