PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013628412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 173aa MW: 20305.5 Da PI: 11.0248 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.1 | 4.7e-29 | 15 | 68 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW+++LH+ Fv +v++LGG+ kAtPk+i+++m+vk+Ltl+hvkSHLQ+YR XP_013628412.1 15 PRLRWATDLHQYFVYVVNRLGGERKATPKKIVQAMGVKSLTLSHVKSHLQMYRN 68 8****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 11 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-14 | 13 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-22 | 15 | 70 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MEKPIVRFYT KSKMPRLRWA TDLHQYFVYV VNRLGGERKA TPKKIVQAMG VKSLTLSHVK 60 SHLQMYRNKK RRDSVQAERR MRREMRWRQS QQHLQIYERL RDAIEFMQNQ RRLSDNKEKT 120 IEFLKPSNKA MEVVHADDGF VAAGDGANVR LNSTGVLKGE EKLSLGLTLG LNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-15 | 16 | 72 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-15 | 16 | 72 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-15 | 16 | 72 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-15 | 16 | 72 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-15 | 16 | 72 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-15 | 16 | 72 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-15 | 16 | 72 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-15 | 16 | 72 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013628412.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628412.1 | 1e-127 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A3P6B1Y6 | 1e-125 | A0A3P6B1Y6_BRAOL; Uncharacterized protein | ||||
STRING | Bra029503.1-P | 1e-113 | (Brassica rapa) | ||||
STRING | Bo9g077970.1 | 1e-113 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04580.1 | 2e-39 | G2-like family protein |