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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013628368.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
bZIP |
| Protein Properties |
Length: 331aa MW: 36757.3 Da PI: 9.4234 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013628368.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 30.7 | 6.9e-10 | 47 | 87 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L
XP_013628368.1 47 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 87
7789************************9877777766555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MADTSSRTDA STDGDTDPRD MGSERGQGML AAASDSSGRS KDKLDQKTVR RLAQNREAAR 60
KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGVFISSS GDQAHSTGGN GALAFDAEHS 120
RWLEEKNKQM NELRSALNAH AGDTELRIIV EGVMSHYEEL FRIKSSAAKN DVFHLLSGMW 180
KTPAERCFLW LGGFRSSELL KLIANQLEPI TERQVMGLNS LQQTSQQAED ALSQGMESLQ 240
QSLADTLSSG TLGSSSSDNV ASYMGQMAMA MGQLGTLEGF IRQADNLRLQ TLQQMIRVLT 300
TRQSARAFLA IHDYSSRLRA LSSLWLARPR E
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed primarily in roots of young seedlings and later expressed in aging cotyledons, mesophyll cells of hydathodes on leaf margins, vascular tissue and trichomes of senescing rosette leaves. Also detected in young lateral roots and in mature pollen grains. |
| Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots and flowers. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ320540 | 0.0 | AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene). |
| GenBank | BT029515 | 0.0 | BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds. |
