PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628248.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 868aa    MW: 97493.5 Da    PI: 7.1785
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-187808621397
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     s+  +lp +f++ +g++k++ k++tl+ ++g  W v l+ ++ +gr+ l++GWk+F++a+g+k gD++v++l+++++ + v+k++
  XP_013628248.1 780 SN-KRLPLRFTRVNGINKAG-KKITLMGQDGVNWMVLLTNENERGRMRLGRGWKGFCEAHGVKIGDSFVLELMREKDSSHVLKFC 862
                     43.789*****999999865.7****************99*********************************987777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF03709001800IPR017103Ionotropic glutamate receptor, plant
SuperFamilySSF538221.78E-6222431IPR028082Periplasmic binding protein-like I
CDDcd063661.24E-9630407No hitNo description
PfamPF010942.4E-5948389IPR001828Receptor, ligand binding region
Gene3DG3DSA:3.40.50.23006.7E-1669145No hitNo description
Gene3DG3DSA:3.40.50.23009.0E-21146292No hitNo description
Gene3DG3DSA:3.40.50.23006.7E-16293371No hitNo description
SuperFamilySSF538502.86E-40427575No hitNo description
Gene3DG3DSA:3.40.190.101.1E-25445544No hitNo description
CDDcd136863.47E-101447782No hitNo description
SMARTSM000791.1E-41450790IPR001320Ionotropic glutamate receptor
PfamPF004973.1E-15475781IPR001638Solute-binding protein family 3/N-terminal domain of MltF
Gene3DG3DSA:1.10.287.704.3E-20560682No hitNo description
PfamPF000605.5E-28571738IPR001320Ionotropic glutamate receptor
SuperFamilySSF538502.86E-40678781No hitNo description
Gene3DG3DSA:3.40.190.101.1E-25750781No hitNo description
PROSITE profilePS5086313.281767864IPR003340B3 DNA binding domain
SMARTSM010194.8E-14774865IPR003340B3 DNA binding domain
PfamPF023623.9E-17780862IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-16782863IPR015300DNA-binding pseudobarrel domain
CDDcd100179.57E-18783862No hitNo description
SuperFamilySSF1019362.35E-16783863IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0004970Molecular Functionionotropic glutamate receptor activity
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MMRGNNFVLI LLFFFRMQVR EAQNTDVKVG IVTDVGRENS DITLLCISMS LSDFYSSHPE  60
TRTRLITTIV DSKNDVVLSA AAALDLITNK EVKAILGPWT WMQAQFMIEM GQKSQVPTVS  120
YSATSPFLAS IRSQYFFGAT YDDSSQVHAI KAIIELFMWR EVAPAYVDNT FGEGILPSLT  180
NALQEINVRI PYRTVIYPNA TDDEISVELL RMMNLPTRVF VVHIAKLLGS RFFAKAKEIG  240
MMKQGYVWIL TNSIADDLSI MNETEIETME GVLGVKTYFP RSEELETFKS RWKKRFPNSD  300
LSVYGLCAYD ATTALALAIE EAGTSNLTFV KTDAMRDMSE LQGLGVSQYG PKLVQALSRV  360
RFKALAGDFQ FINGQLHPSV FEIVNVDGRG GRTIGFWKKE HGLLKNLEQK PATTTTSSTW  420
QDRLRPIIWP GDTMSVPKGW EIPTNGKRLR IGVPTNNGFK QFVKATRDPI TNSTIFSGFC  480
IDYFEAVIQA MSYDVSYDFI PFEDVNYDTA IYQVYLGLEY DAMVADTTMS ANRSMYVDFS  540
LPYTPSGIGV VVPVEESVKR SSIIFLTPLT LELWVISLLS FFIIGLVVWV LEHRVNPDFD  600
GSVKYQISTI FWFSFSIIAF APRERVLSFW ARLVVIIWYF LVLVLTQSYT ASLSSLLTSQ  660
QLDSTITSMN SLLAKGEPVG YQLSSFLLGR LQESGFSDAN LVTYGSAENC DDLLSKGPQK  720
GGISAAFMEV PYVKLFLGQY CNKYKMVETP FKFNGLGFVF PIGSPLVADV SRAILQVQES  780
NKRLPLRFTR VNGINKAGKK ITLMGQDGVN WMVLLTNENE RGRMRLGRGW KGFCEAHGVK  840
IGDSFVLELM REKDSSHVLK FCTKLNCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5kuf_A5e-23136782114759Glutamate receptor ionotropic, kainate 2
5kuf_B5e-23136782114759Glutamate receptor ionotropic, kainate 2
5kuf_C5e-23136782114759Glutamate receptor ionotropic, kainate 2
5kuf_D5e-23136782114759Glutamate receptor ionotropic, kainate 2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots. First strongly detected in all cell types of the root except at the apex. Later expressed at the root-shoot junction. {ECO:0000269|PubMed:12082126}.
Functional Description ? help Back to Top
Source Description
UniProtGlutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628248.10.0PREDICTED: glutamate receptor 2.1-like
SwissprotO046600.0GLR21_ARATH; Glutamate receptor 2.1
TrEMBLA0A0D3BLY40.0A0A0D3BLY4_BRAOL; Glutamate receptor
STRINGBo3g173760.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.14e-19B3 family protein
Publications ? help Back to Top
  1. Lacombe B, et al.
    The identity of plant glutamate receptors.
    Science, 2001. 292(5521): p. 1486-7
    [PMID:11379626]
  2. Chiu JC, et al.
    Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana.
    Mol. Biol. Evol., 2002. 19(7): p. 1066-82
    [PMID:12082126]
  3. Turner TL,von Wettberg EJ,Nuzhdin SV
    Genomic analysis of differentiation between soil types reveals candidate genes for local adaptation in Arabidopsis lyrata.
    PLoS ONE, 2008. 3(9): p. e3183
    [PMID:18784841]