 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_013628089.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
bHLH |
| Protein Properties |
Length: 551aa MW: 62581 Da PI: 7.5666 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013628089.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 15.9 | 2.3e-05 | 371 | 404 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
N++f+ Lr ++P+ + ++K eiL +++Y+++L+
XP_013628089.1 371 NEKFSVLRAMVPTvN------EVDKEEILNNTIKYLQELE 404
9************55......8***************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 551 aa
Download sequence Send
to blast |
MSLTMDDDGV EAPRGRSRRR NSLLSKQLAV AVKSVQWSYA IFWSSSPTQS GVLEWGEGCY 60
NGEMKKRKKR YEVHYKHVLQ RSNQLRKLYL CMREGDSTNT ISTTHDDGYH NCNSTTSMLL 120
SPDDLSDEEW YYVVSMSYVF SPSQCLPGRA LATGETIWLC NAQYADSKLF SRSLLARSAS 180
IQTVVCFPYL GGVIELGVTE LISEDPSLLQ HIKSCLLETS KPDCPSNNFS AHQYNADDDK 240
KNQMKIKISE VNSALQENPQ IQFGISDLML DEDLHYKRTV STLLKYAADK SKMKNSHHRQ 300
PELVSSNSGS SFLRWKQPSS NLLLKHSNSQ NVLRKILHDV PLMHSVDTKT LSTNKMFGLN 360
QDDPSVKRKE NEKFSVLRAM VPTVNEVDKE EILNNTIKYL QELEERVEEL ESCMGSVNFV 420
GKQRKTKKSL NDSVLIEETS GNYDDSTKID GNSGETEQAV TVLRDETHFR VKLKETEVVM 480
EVRCSYRDYI VADIMETLSK LHMDAFSVRS HTLNGFLTLN LKAKLREAAV ASVGMIKREL 540
RRVIGETMRI T
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 4e-12 | 24 | 216 | 9 | 192 | Transcription factor MYC3 |
| 4rqw_B | 4e-12 | 24 | 216 | 9 | 192 | Transcription factor MYC3 |
| 4rs9_A | 4e-12 | 24 | 216 | 9 | 192 | Transcription factor MYC3 |
| 4yz6_A | 4e-12 | 24 | 216 | 9 | 192 | Transcription factor MYC3 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:8980509}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493664 | 0.0 | AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480. |
| GenBank | AF251697 | 0.0 | AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds. |
