PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013627967.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 192aa MW: 22259.5 Da PI: 6.5092

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013627967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.6	2.8e-13	74	123	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++ ++l++ ++ XP_013627967.1 74 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQILDKLNKASD 123 689************************************88877776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.8E-11	70	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.151	72	120	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-12	74	123	No hit	No description
Pfam	PF00170	2.0E-11	74	131	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-9	74	146	No hit	No description
CDD	cd14702	9.55E-19	75	122	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MHPDYDSSSI KNMQQQNYFH LNHYYSNLNP STNNNLNLIS YPQMQELNNL QSPASHNSTT 60 SDEATEDVFV INERKQRRMV SNRESARRSR MRKQRHLDEL LSQVAWLRSE NHQILDKLNK 120 ASDSNDLVLQ ENVILKEENL ELRQVITSMK KLGGAEGGST SFHERYCSSS LDHDLDQDFS 180 CITNDPKTHH PS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	93	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013627967.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232554	0.0	AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013627967.1	1e-141	PREDICTED: basic leucine zipper 43-like
Refseq	XP_013740180.1	1e-141	basic leucine zipper 43-like
Swissprot	Q9FMC2	8e-32	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A0D3B1C9	1e-140	A0A0D3B1C9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AG93	1e-140	A0A3P6AG93_BRAOL; Uncharacterized protein
STRING	Bo3g010620.1	1e-140	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10632	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	2e-88	basic leucine-zipper 3

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]