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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013627963.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
C2H2 |
| Protein Properties |
Length: 224aa MW: 25209.7 Da PI: 8.9713 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013627963.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.7 | 9.5e-06 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ Cg+ F++ L H+++H
XP_013627963.1 53 YTCSFCGREFKSAQALGGHMNVH 75
9********************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MRSYSCLMER DKCLMSMKFR PVVTRQSSNA ALLWPFGEEY GGGGGCMWPP RSYTCSFCGR 60
EFKSAQALGG HMNVHRRDRA RLKQQSLSSS STDQATPLDY DHHQQVQKQP EVLDVGPKFP 120
VQEDSRKPNG SKREISDVLE SSMKRFEHYN DEVKTDLSIG LVSSEFDPRR KQLINGVLAS 180
KKAKTDVSRL PMMVGLVIGV SKINGHHEEL DLELRLGADP PKVN
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Not expressed in the inflorescence meristem or in the flowers at stages 1 and 2. First expressed in the precursor cells of petal primordia in stage 3 flowers and in the developing petal primordia up to stage 6. Not expressed at later stages. {ECO:0000269|PubMed:14681191}. |
| Uniprot | TISSUE SPECIFICITY: Strongly expressed in inflorescences and flowers, and weakly in siliques, seedlings and roots. In flowers, it is expressed in petal primordia and their precursor cells. Also expressed in the lateral root caps and the basal cells of lateral roots. {ECO:0000269|PubMed:14681191}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB107371 | 3e-73 | AB107371.1 Arabidopsis thaliana RBE mRNA for one finger-type zinc finger protein for RABBIT EARS, complete cds. |
| GenBank | AP002030 | 3e-73 | AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4. |
| GenBank | AY088861 | 3e-73 | AY088861.1 Arabidopsis thaliana clone 97505 mRNA, complete sequence. |
| GenBank | CP002688 | 3e-73 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
